CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX77337
CDY70592

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G03940.1	CDX77337	AT2G47450.1	11306572
AT5G03940.1	CDY70592	AT2G47450.1	11306572
AT5G03940.1	CDX77337	AT2G47450.1	14517205
AT5G03940.1	CDY70592	AT2G47450.1	14517205
AT5G03940.1	CDX77337	AT2G47450.1	15292240
AT5G03940.1	CDY70592	AT2G47450.1	15292240
AT5G03940.1	CDX77337	AT2G47450.1	15632183
AT5G03940.1	CDY70592	AT2G47450.1	15632183
AT5G03940.1	CDX77337	AT2G47450.1	16678173
AT5G03940.1	CDY70592	AT2G47450.1	16678173

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX70273	Canola	plastid	96.81	96.64
Bra009499.1-P	Field mustard	plastid	95.58	95.41
AT5G03940.1	Thale cress	plastid	90.97	91.13
CDY04905	Canola	plastid	88.14	88.3
CDY14166	Canola	plastid	87.79	87.94
CDY14165	Canola	plastid	33.1	83.11
VIT_08s0007g03160.t01	Wine grape	plastid	81.59	81.31
PGSC0003DMT400022884	Potato	plastid	78.41	79.25
Solyc09g009940.2.1	Tomato	plastid	78.41	78.13
KRH67940	Soybean	plastid	77.88	77.88
GSMUA_Achr10P...	Banana	plastid	75.22	73.91
Os11t0153600-01	Rice	cytosol	27.43	70.78
KXG27759	Sorghum	plastid	66.73	68.42
TraesCS4D01G115500.1	Wheat	plastid	67.08	68.41
Zm00001d052556_P001	Maize	plastid	65.84	68.26
TraesCS4A01G197700.1	Wheat	plastid	66.55	67.87
TraesCS4B01G117800.1	Wheat	plastid	66.37	67.69
EES16662	Sorghum	plastid	66.19	66.91
Zm00001d023431_P002	Maize	plastid	66.37	66.49
HORVU4Hr1G021960.1	Barley	plastid	65.66	66.13
Os11t0153700-01	Rice	plastid	64.96	65.89
TraesCS4D01G115600.1	Wheat	plastid	63.36	64.62
TraesCS4A01G197600.1	Wheat	plastid	63.19	64.56
HORVU4Hr1G021950.4	Barley	plastid	63.36	64.5
TraesCS4B01G117900.1	Wheat	plastid	62.12	58.99
CDY16472	Canola	cytosol	19.65	28.32
CDY40616	Canola	cytosol	23.72	27.07
CDX93702	Canola	cytosol	23.72	27.07
CDX77276	Canola	cytosol	23.54	26.81
CDY27360	Canola	plastid	16.99	26.16
CDY37064	Canola	plastid	16.99	26.09
CDY39632	Canola	cytosol	22.12	26.04
CDY36546	Canola	cytosol	21.95	25.89
CDY18901	Canola	plastid	16.46	25.76
CDX74765	Canola	plastid	16.46	25.27
CDY10656	Canola	cytosol	8.67	25.0
CDY46694	Canola	cytosol	11.86	21.61
CDY17067	Canola	cytosol, nucleus	12.04	21.05
CDY39221	Canola	cytosol, endoplasmic reticulum	16.46	15.12
CDX72255	Canola	cytosol, endoplasmic reticulum	16.28	14.94
CDY28196	Canola	endoplasmic reticulum	16.28	14.79
CDX68673	Canola	extracellular	16.11	14.49
Os11t0153800-01	Rice	nucleus	0.35	1.85

Protein Annotations

Gene3D:1.10.260.30	Gene3D:1.20.120.140	MapMan:23.1.7.3.2	Gene3D:3.40.50.300	GO:A0A078HVP0	UniProt:A0A078HVP0
InterPro:AAA+_ATPase	EnsemblPlants:CDY41424	ProteinID:CDY41424	ProteinID:CDY41424.1	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006614	GO:GO:0006810
GO:GO:0008150	GO:GO:0008312	GO:GO:0016787	GO:GO:0048500	EnsemblPlantsGene:GSBRNA2T00073016001	InterPro:IPR036891
HAMAP:MF_00306	InterPro:P-loop_NTPase	PFAM:PF00448	PFAM:PF02881	PFAM:PF02978	ScanProsite:PS00300
PANTHER:PTHR11564	PANTHER:PTHR11564:SF24	SMART:SM00382	SMART:SM00962	SMART:SM00963	InterPro:SRP54
InterPro:SRP54_GTPase_dom	InterPro:SRP_Ffh	SUPFAM:SSF47446	SUPFAM:SSF52540	InterPro:Signal_recog_part_SRP54_M_sf	InterPro:Signal_recog_particl_SRP54_hlx
InterPro:Signal_recog_particle_SRP54_M	TIGRFAMs:TIGR00959	UniParc:UPI0004EF03BE	SEG:seg	:	:

Description

BnaCnng10600DBnaCnng10600D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HVP0]

Coordinates

chrLK032497:+:246051..249152

Molecular Weight (calculated)

61762.3 Da

IEP (calculated)

10.250

GRAVY (calculated)

-0.276

Length

565 amino acids

Sequence
(BLAST)

001: MEALRFSSRF SVNNRVPYTQ TSTGSLTSRA TFRSAFTGIT NSASLSSKNT STREIWSWVK SKTVGHGRSY RRSQVRAEMF GQLTSGLEAA WTKLKGEEVL
101: TKENIAEPMR DIRRALLEAD VSLPVVRRFV QSVSDQAVGM GVIRGVKPDQ QLVKIVHDEL VKLMGGEVSE LQFSKSGPTV ILLAGLQGVG KTTVCAKLAC
201: YLKKQGKTCM LIAGDVYRPA AIDQLVILGE QVSVPVYTAG TEVRPADIAK EGLKEAKKNN VDIVIMDTAG RLQIDKGMMD ELKDVKKVLN PTEVLLVVDA
301: MTGQEAAALV TTFNVEIGIT GAILTKLDGD SRGGAALSVK EVSGKPIKLV GRGERMEDLE PFYPNRMAGR VLGMGDVLSF VEKAQEVMRE EDAEDLQKKI
401: MSAKFDFNDF LKQTRAVAKM GSMTRVLGMI PGMGKVSPAQ IREAEKSLVI MEAMIEAMTP EEREKPELLA ESPERRKRVA KESGKTEQQV SQLVAQIFQM
501: RVKMKNLMGA MEGGSIPALS SLEDALKAQQ KAPPGTARRR KRKVDSRKKF VESASSNPGP RGFGN

Best Arabidopsis Sequence Match ( AT5G03940.1 )
(BLAST)

001: MEALQFSSVN RVPCTLSCTG NRRIKAAFSS AFTGGTINSA SLSSSRNLST REIWSWVKSK TVVGHGRYRR SQVRAEMFGQ LTGGLEAAWS KLKGEEVLTK
101: DNIAEPMRDI RRALLEADVS LPVVRRFVQS VSDQAVGMGV IRGVKPDQQL VKIVHDELVK LMGGEVSELQ FAKSGPTVIL LAGLQGVGKT TVCAKLACYL
201: KKQGKSCMLI AGDVYRPAAI DQLVILGEQV GVPVYTAGTD VKPADIAKQG LKEAKKNNVD VVIMDTAGRL QIDKGMMDEL KDVKKFLNPT EVLLVVDAMT
301: GQEAAALVTT FNVEIGITGA ILTKLDGDSR GGAALSVKEV SGKPIKLVGR GERMEDLEPF YPDRMAGRIL GMGDVLSFVE KATEVMRQED AEDLQKKIMS
401: AKFDFNDFLK QTRAVAKMGS MTRVLGMIPG MGKVSPAQIR EAEKNLLVME AMIEVMTPEE RERPELLAES PERRKRIAKD SGKTEQQVSA LVAQIFQMRV
501: KMKNLMGVME GGSIPALSGL EDALKAEQKA PPGTARRKRK ADSRKKFVES ASSKPGPRGF GSGN

Arabidopsis Description

FFCSRP54CP [Source:UniProtKB/TrEMBL;Acc:A0A178UD49]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.