CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
OQU93303

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G03940.1	OQU93303	AT2G47450.1	11306572
AT5G03940.1	OQU93303	AT2G47450.1	14517205
AT5G03940.1	OQU93303	AT2G47450.1	15292240
AT5G03940.1	OQU93303	AT2G47450.1	15632183
AT5G03940.1	OQU93303	AT2G47450.1	16678173

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d023431_P002	Maize	plastid	96.06	95.21
TraesCS4A01G197600.1	Wheat	plastid	83.72	84.63
HORVU4Hr1G021950.4	Barley	plastid	83.9	84.5
TraesCS4D01G115600.1	Wheat	plastid	83.72	84.48
KXG27759	Sorghum	plastid	76.21	77.31
TraesCS4B01G117900.1	Wheat	plastid	81.4	76.47
KRH67940	Soybean	plastid	70.3	69.56
GSMUA_Achr10P...	Banana	plastid	70.48	68.52
VIT_08s0007g03160.t01	Wine grape	plastid	69.23	68.25
AT5G03940.1	Thale cress	plastid	68.52	67.91
PGSC0003DMT400022884	Potato	plastid	67.44	67.44
Solyc09g009940.2.1	Tomato	plastid	68.16	67.2
Bra009499.1-P	Field mustard	plastid	67.44	66.61
CDX70273	Canola	plastid	67.26	66.43
CDY04905	Canola	plastid	66.91	66.31
CDY41424	Canola	plastid	66.91	66.19
Bra028809.1-P	Field mustard	plastid	66.73	66.13
CDY14166	Canola	plastid	66.19	65.6
CDY14165	Canola	plastid	21.29	52.89
KXG37972	Sorghum	cytosol	22.72	28.48
KXG37974	Sorghum	cytosol	22.72	28.48
EES19782	Sorghum	cytosol	23.43	27.18
EES01544	Sorghum	cytosol	23.97	27.02
KXG34125	Sorghum	cytosol	23.26	26.16
EES04254	Sorghum	plastid	16.46	25.14
EER93028	Sorghum	cytosol, endoplasmic reticulum, mitochondrion, plastid	18.96	16.99
EES17686	Sorghum	endoplasmic reticulum, extracellular	17.53	16.67

Protein Annotations

Gene3D:1.10.260.30	Gene3D:1.20.120.140	MapMan:23.1.7.3.2	Gene3D:3.40.50.300	EntrezGene:8079832	InterPro:AAA+_ATPase
UniProt:C5YS38	EnsemblPlants:EES16662	ProteinID:EES16662	ProteinID:EES16662.1	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006614	GO:GO:0006810
GO:GO:0008150	GO:GO:0008312	GO:GO:0016787	GO:GO:0048500	InterPro:IPR036891	HAMAP:MF_00306
InterPro:P-loop_NTPase	PFAM:PF00448	PFAM:PF02881	PFAM:PF02978	PANTHER:PTHR11564	PANTHER:PTHR11564:SF19
SMART:SM00382	SMART:SM00962	SMART:SM00963	EnsemblPlantsGene:SORBI_3008G039600	InterPro:SRP54	InterPro:SRP54_GTPase_dom
InterPro:SRP_Ffh	SUPFAM:SSF47446	SUPFAM:SSF52540	unigene:Sbi.14227	InterPro:Signal_recog_part_SRP54_M_sf	InterPro:Signal_recog_particl_SRP54_hlx
InterPro:Signal_recog_particle_SRP54_M	TIGRFAMs:TIGR00959	UniParc:UPI0001A885AA	RefSeq:XP_002442824.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr8:-:3832214..3838786

Molecular Weight (calculated)

61494.0 Da

IEP (calculated)

10.459

GRAVY (calculated)

-0.323

Length

559 amino acids

Sequence
(BLAST)

001: MEATTALALS SSLATARRSP EKAAAASSLR LRNFSATSSL HHLRAARSPA PRSHPSSSPF QGWRRRGRAG GLVVRAEMFG QLTTGLESAW NKLRGVDILT
101: KENIAEPMRD IRRALLEADV SLPVVRRFIE SVSEKAVGTD VIRGVRPDQQ LVKVVNDELV QLMGGEVSDL VFAKSGPTII LLAGLQGVGK TTVCAKLAFY
201: LKKMGKSCML VAADVYRPAA IDQLTILGKK VGVPVYSEGT EAKPSQIAKN GLKEAKVNKA DVIIVDTAGR LQVDKSMMNE LKEVKKAVNP TEVLLVVDAM
301: TGQEAAGLVS SFNDEIGITG AILTKLDGDS RGGAALSVKE VSGKPIKFVG QGERIEDLEP FYPDRMAQRI LGMGDVLSFV EKAQEVMRQE DAEELQKKIL
401: SAKFNFNDFL KQTQMIAQMG SFSRLIGMIP GMNKVTPAQI REAEKNLKFM ESMINVMTPE ERERPELLAE SRERRKRVAK DSGKTEQQVG QLVAQLFQMR
501: AKMQKMMGAI QGKESPDMDE LMESMKAEEQ AAAGTGRRRR KYGNLRQRQL DAMRGFRRR

Best Arabidopsis Sequence Match ( AT5G03940.1 )
(BLAST)

001: MEALQFSSVN RVPCTLSCTG NRRIKAAFSS AFTGGTINSA SLSSSRNLST REIWSWVKSK TVVGHGRYRR SQVRAEMFGQ LTGGLEAAWS KLKGEEVLTK
101: DNIAEPMRDI RRALLEADVS LPVVRRFVQS VSDQAVGMGV IRGVKPDQQL VKIVHDELVK LMGGEVSELQ FAKSGPTVIL LAGLQGVGKT TVCAKLACYL
201: KKQGKSCMLI AGDVYRPAAI DQLVILGEQV GVPVYTAGTD VKPADIAKQG LKEAKKNNVD VVIMDTAGRL QIDKGMMDEL KDVKKFLNPT EVLLVVDAMT
301: GQEAAALVTT FNVEIGITGA ILTKLDGDSR GGAALSVKEV SGKPIKLVGR GERMEDLEPF YPDRMAGRIL GMGDVLSFVE KATEVMRQED AEDLQKKIMS
401: AKFDFNDFLK QTRAVAKMGS MTRVLGMIPG MGKVSPAQIR EAEKNLLVME AMIEVMTPEE RERPELLAES PERRKRIAKD SGKTEQQVSA LVAQIFQMRV
501: KMKNLMGVME GGSIPALSGL EDALKAEQKA PPGTARRKRK ADSRKKFVES ASSKPGPRGF GSGN

Arabidopsis Description

FFCSRP54CP [Source:UniProtKB/TrEMBL;Acc:A0A178UD49]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.