Factsheet for TraesCS4B01G117900.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4B01G326700.1
TraesCS4D01G323400.1
TraesCS5A01G498700.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G03940.1	TraesCS4B01G326700.1	AT2G47450.1	11306572
AT5G03940.1	TraesCS4D01G323400.1	AT2G47450.1	11306572
AT5G03940.1	TraesCS5A01G498700.1	AT2G47450.1	11306572
AT5G03940.1	TraesCS4B01G326700.1	AT2G47450.1	14517205
AT5G03940.1	TraesCS4D01G323400.1	AT2G47450.1	14517205
AT5G03940.1	TraesCS5A01G498700.1	AT2G47450.1	14517205
AT5G03940.1	TraesCS4B01G326700.1	AT2G47450.1	15292240
AT5G03940.1	TraesCS4D01G323400.1	AT2G47450.1	15292240
AT5G03940.1	TraesCS5A01G498700.1	AT2G47450.1	15292240
AT5G03940.1	TraesCS4B01G326700.1	AT2G47450.1	15632183
AT5G03940.1	TraesCS4D01G323400.1	AT2G47450.1	15632183
AT5G03940.1	TraesCS5A01G498700.1	AT2G47450.1	15632183
AT5G03940.1	TraesCS4B01G326700.1	AT2G47450.1	16678173
AT5G03940.1	TraesCS4D01G323400.1	AT2G47450.1	16678173
AT5G03940.1	TraesCS5A01G498700.1	AT2G47450.1	16678173

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G197600.1	Wheat	plastid	89.24	96.02
TraesCS4D01G115600.1	Wheat	plastid	88.91	95.49
HORVU4Hr1G021950.4	Barley	plastid	87.73	94.05
EES16662	Sorghum	plastid	76.47	81.4
Zm00001d023431_P002	Maize	plastid	76.3	80.5
TraesCS4B01G117800.1	Wheat	plastid	68.74	73.83
KRH67940	Soybean	plastid	62.69	66.02
VIT_08s0007g03160.t01	Wine grape	plastid	62.69	65.78
GSMUA_Achr10P...	Banana	plastid	63.53	65.74
PGSC0003DMT400022884	Potato	plastid	60.17	64.04
Solyc09g009940.2.1	Tomato	plastid	61.01	64.02
AT5G03940.1	Thale cress	plastid	59.83	63.12
CDY04905	Canola	plastid	58.99	62.23
CDX70273	Canola	plastid	59.16	62.19
CDY41424	Canola	plastid	58.99	62.12
Bra028809.1-P	Field mustard	plastid	58.82	62.06
Bra009499.1-P	Field mustard	plastid	58.99	62.01
CDY14166	Canola	plastid	58.32	61.52
CDY14165	Canola	plastid	18.49	48.89
TraesCS3B01G342900.1	Wheat	cytosol	23.03	28.31
TraesCS1B01G340600.1	Wheat	golgi, plastid	22.52	26.96
TraesCS3B01G561300.1	Wheat	plastid	15.8	26.33
TraesCS1B01G340700.1	Wheat	cytosol	21.18	25.51
TraesCS6B01G129300.1	Wheat	endoplasmic reticulum	16.97	16.61
TraesCS4B01G367200.1	Wheat	cytosol, endoplasmic reticulum, mitochondrion, plastid	16.97	15.66

Protein Annotations

Gene3D:1.10.260.30	Gene3D:1.20.120.140	MapMan:23.1.7.3.2	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	ncoils:Coil
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0003924
GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006614	GO:GO:0006810	GO:GO:0008150	GO:GO:0008312	GO:GO:0016787	GO:GO:0048500
InterPro:IPR036891	HAMAP:MF_00306	InterPro:P-loop_NTPase	PFAM:PF00448	PFAM:PF02881	PFAM:PF02978
ScanProsite:PS00300	PANTHER:PTHR11564	PANTHER:PTHR11564:SF19	SMART:SM00382	SMART:SM00962	SMART:SM00963
InterPro:SRP54	InterPro:SRP54_GTPase_dom	InterPro:SRP_Ffh	SUPFAM:SSF47446	SUPFAM:SSF52540	InterPro:Signal_recog_part_SRP54_M_sf
InterPro:Signal_recog_particl_SRP54_hlx	InterPro:Signal_recog_particle_SRP54_M	TIGRFAMs:TIGR00959	EnsemblPlantsGene:TraesCS4B01G117900	EnsemblPlants:TraesCS4B01G117900.1	TIGR:cd03115
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr4B:-:136675447..136680819

Molecular Weight (calculated)

65271.7 Da

IEP (calculated)

9.420

GRAVY (calculated)

-0.186

Length

595 amino acids

Sequence
(BLAST)

001: MEATATLTLS SSPAGARRSP ARPTVASLHL RRVPTLSFHL RGAQSPAAFR ALSSPFPGCR RRRRGSGMVV RAEMFGQLTT GLESAWNKLR GVDRLTKENI
101: AEPMRDIRRA LLEADVSVPV ARSFIESVTE KAIGTDVIRG VQPEQQLVKV VNDELVQLMG GEVSDLVFAK TGPTVILLAG LQGVGKTTVC AKLAFYLKKM
201: GKSCMLVAAD VYRPAAIDQL TILGKKVGVP VYSEGTEAKP SEIAKNGLKE AKSKKTDVVI VDTAGRLQVD KAMMNELKEV KKAVKPTEIL LVVDAMTGQE
301: AAALVGAFNV EIGITGAILT KLDGDSRGGA ALSIKEVSGK PIKFIGRGER VEDLEPFYPD RMAQRILGMG DVLSFVEQAQ QVMNQEDAEE LQKKIMSAKF
401: NFNDFLKQTK AIAQMGSFSR IIGMIPGMNK VTPAQIREAE KNVKFMESMI NVMTADERER PELLAESRER RRRVAKDAGK TEQQVSQLVS QLFQMRTRMQ
501: KMMAGMQGKD TPDMENLAES IKAEEQEEVR QPEAAGSGLD ARLPQMRCGW PWGTLPLEPS TDIFEISSCS LQVVTTYVYT ALLCVSDVYF LCKFQ

Best Arabidopsis Sequence Match ( AT1G15310.1 )
(BLAST)

001: MVLAELGGRI TRAIQQMNNV TIIDEKVLND FLNEITRALL QSDVSFGLVE KMQTNIKKIV NLDDLAAGHN KRLIIEQAIF KELCRMLDPG KPAFAPKKAK
101: PSVVMFVGLQ GAGKTTTCTK YAYYHQKKGY KAALVCADTF RAGAFDQLKQ NATKAKIPFY GSYTESDPVK IAVEGVDRFK KEKCDLIIVD TSGRHKQAAS
201: LFEEMRQVAE ATEPDLVIFV MDSSIGQAAF EQAEAFKETV SVGAVIITKM DGHAKGGGAL SAVAATKSPV IFIGTGEHMD EFEVFDVKPF VSRLLGKGDW
301: SGLVDKLQEV VPKDLQNELV ENLSQGNFTL RSMYDQFQCS LRIPLNQLFS MLPGISAEMM PKGHGEESRV KMKRYMTMMD SMTNKELDSP NPKIFNESRI
401: MRIARGSGRL VREVMEMLEE YKRIAKTMKG IKIPKNGDMS KVIPPQMLKQ MGGMSGLQSL MKQMGSAKDM MGMFGGGGK

Arabidopsis Description

SRP-54ASignal recognition particle 54 kDa protein [Source:UniProtKB/TrEMBL;Acc:Q56XJ0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.