Factsheet for VIT_08s0007g03160.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_03s0038g03560.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G03940.1	VIT_03s0038g03560.t01	AT2G47450.1	11306572
AT5G03940.1	VIT_03s0038g03560.t01	AT2G47450.1	14517205
AT5G03940.1	VIT_03s0038g03560.t01	AT2G47450.1	15292240
AT5G03940.1	VIT_03s0038g03560.t01	AT2G47450.1	15632183
AT5G03940.1	VIT_03s0038g03560.t01	AT2G47450.1	16678173

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH67940	Soybean	plastid	83.77	84.07
Solyc09g009940.2.1	Tomato	plastid	83.77	83.77
PGSC0003DMT400022884	Potato	plastid	82.54	83.72
CDX70273	Canola	plastid	81.66	81.8
AT5G03940.1	Thale cress	plastid	81.31	81.74
CDY41424	Canola	plastid	81.31	81.59
Bra009499.1-P	Field mustard	plastid	81.31	81.45
GSMUA_Achr10P...	Banana	plastid	82.19	81.04
CDY14166	Canola	plastid	77.6	78.01
Bra028809.1-P	Field mustard	plastid	77.42	77.84
CDY04905	Canola	plastid	77.25	77.66
Os11t0153600-01	Rice	cytosol	28.22	73.06
Zm00001d052556_P001	Maize	plastid	68.08	70.83
KXG27759	Sorghum	plastid	68.08	70.05
TraesCS4D01G115500.1	Wheat	plastid	68.43	70.04
TraesCS4A01G197700.1	Wheat	plastid	67.9	69.49
TraesCS4B01G117800.1	Wheat	plastid	67.72	69.31
EES16662	Sorghum	plastid	68.25	69.23
Zm00001d023431_P002	Maize	plastid	68.43	68.79
Os11t0153700-01	Rice	plastid	67.37	68.58
HORVU4Hr1G021950.4	Barley	plastid	66.84	68.29
TraesCS4D01G115600.1	Wheat	plastid	66.67	68.23
TraesCS4A01G197600.1	Wheat	plastid	66.49	68.17
HORVU4Hr1G021960.1	Barley	plastid	66.49	67.2
CDY14165	Canola	plastid	26.28	66.22
TraesCS4B01G117900.1	Wheat	plastid	65.78	62.69
VIT_09s0002g07290.t01	Wine grape	cytosol	23.99	27.47
VIT_15s0048g02080.t01	Wine grape	plastid	16.4	25.34
VIT_11s0037g00300.t01	Wine grape	endoplasmic reticulum	17.11	15.75
Os11t0153800-01	Rice	nucleus	0.35	1.85

Protein Annotations

Gene3D:1.10.260.30	Gene3D:1.20.120.140	EntrezGene:100247624	wikigene:100247624	MapMan:23.1.7.3.2	Gene3D:3.40.50.300
InterPro:AAA+_ATPase	ProteinID:CBI30309	ProteinID:CBI30309.3	UniProt:D7TJ83	EMBL:FN595991	GO:GO:0000166
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488
GO:GO:0005515	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006614	GO:GO:0006810	GO:GO:0008150	GO:GO:0008312	GO:GO:0009507	GO:GO:0009536
GO:GO:0009570	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	GO:GO:0019904	GO:GO:0032991
GO:GO:0048500	GO:GO:0070208	InterPro:IPR036891	EntrezGene:LOC100247624	wikigene:LOC100247624	HAMAP:MF_00306
InterPro:P-loop_NTPase	PFAM:PF00448	PFAM:PF02881	PFAM:PF02978	ScanProsite:PS00300	PANTHER:PTHR11564
PANTHER:PTHR11564:SF24	SMART:SM00382	SMART:SM00962	SMART:SM00963	InterPro:SRP54	InterPro:SRP54_GTPase_dom
InterPro:SRP_Ffh	SUPFAM:SSF47446	SUPFAM:SSF52540	InterPro:Signal_recog_part_SRP54_M_sf	InterPro:Signal_recog_particl_SRP54_hlx	InterPro:Signal_recog_particle_SRP54_M
TIGR:TC60389	TIGRFAMs:TIGR00959	UniParc:UPI0001BE394E	ArrayExpress:VIT_08s0007g03160	EnsemblPlantsGene:VIT_08s0007g03160	EnsemblPlants:VIT_08s0007g03160.t01
unigene:Vvi.14721	RefSeq:XP_002276439	RefSeq:XP_002276439.2	SEG:seg	:	:

Description

No Description!

Coordinates

chr8:+:17169681..17180068

Molecular Weight (calculated)

62141.1 Da

IEP (calculated)

10.347

GRAVY (calculated)

-0.250

Length

567 amino acids

Sequence
(BLAST)

001: MEAVPFSTVA SRPFSSTSPS LSTPKSLSRR STNTRCSWTA SKLPLPLSSR NPFTREVWSL VKSKSVSVRR QMPGVIRAEM FGQLTSGLEA AWTKLKGEEV
101: LTKENIVEPM RDIRRALLEA DVSLPVVRRF VQAVSEQAVG VGLIRGVKPD QQLVKIVHDE LVKLMGGEVS ELVFAKSGPT VILLAGLQGV GKTTVCAKLA
201: FYLKKQGKSC MLVAGDVYRP AAIDQLVILG EQVDVPVYTA GTEVKPSQIA KQGLEEARKK NIDVVIVDTA GRLQIDKAMM DELKDVKRAI NPTEVLLVVD
301: AMTGQEAAAL VTTFNVEIGI TGAILTKLDG DSRGGAALSV KEVSGKPIKL VGRGERMEDL EPFYPDRMAG RILGMGDVLS FVEKAQEVMR QEDAEELQKK
401: IMSAKFDFND FLKQTRAVAR MGSMTRVLGM IPGMGKVTPA QIREAEKSLK MMEGMIEAMT PEEREKPELL AESPVRRKRV AQDSGKTEQQ VSQLVAQLFQ
501: MRVRMKNLMG VMEGGSIPAL SNLEETLKSE QKAPPGTARR KRRSESRKQF AEPASSRPSP RGFGSRN

Best Arabidopsis Sequence Match ( AT5G03940.1 )
(BLAST)

001: MEALQFSSVN RVPCTLSCTG NRRIKAAFSS AFTGGTINSA SLSSSRNLST REIWSWVKSK TVVGHGRYRR SQVRAEMFGQ LTGGLEAAWS KLKGEEVLTK
101: DNIAEPMRDI RRALLEADVS LPVVRRFVQS VSDQAVGMGV IRGVKPDQQL VKIVHDELVK LMGGEVSELQ FAKSGPTVIL LAGLQGVGKT TVCAKLACYL
201: KKQGKSCMLI AGDVYRPAAI DQLVILGEQV GVPVYTAGTD VKPADIAKQG LKEAKKNNVD VVIMDTAGRL QIDKGMMDEL KDVKKFLNPT EVLLVVDAMT
301: GQEAAALVTT FNVEIGITGA ILTKLDGDSR GGAALSVKEV SGKPIKLVGR GERMEDLEPF YPDRMAGRIL GMGDVLSFVE KATEVMRQED AEDLQKKIMS
401: AKFDFNDFLK QTRAVAKMGS MTRVLGMIPG MGKVSPAQIR EAEKNLLVME AMIEVMTPEE RERPELLAES PERRKRIAKD SGKTEQQVSA LVAQIFQMRV
501: KMKNLMGVME GGSIPALSGL EDALKAEQKA PPGTARRKRK ADSRKKFVES ASSKPGPRGF GSGN

Arabidopsis Description

FFCSRP54CP [Source:UniProtKB/TrEMBL;Acc:A0A178UD49]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.