Factsheet for VIT_09s0002g07290.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	cytosol
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH47429	Soybean	cytosol, endoplasmic reticulum, nucleus	93.54	93.54
KRH44479	Soybean	cytosol	93.54	93.54
KRH09713	Soybean	cytosol	93.74	92.99
KRH23593	Soybean	cytosol	93.54	92.6
Solyc12g042740.1.1	Tomato	cytosol	93.13	92.38
PGSC0003DMT400073698	Potato	cytosol	92.32	91.58
GSMUA_Achr8P03120_001	Banana	cytosol	91.72	91.35
Os01t0772800-01	Rice	plasma membrane	89.09	88.91
EES01544	Sorghum	cytosol	89.09	88.91
Zm00001d012652_P003	Maize	extracellular	89.09	88.2
PGSC0003DMT400001674	Potato	cytosol	88.48	88.13
AT1G48900.1	Thale cress	cytosol	87.88	87.88
CDY16472	Canola	cytosol	69.49	87.76
Zm00001d043303_P001	Maize	cytosol	87.07	87.25
CDY40616	Canola	cytosol	85.66	85.66
Bra018760.1-P	Field mustard	cytosol	85.66	85.66
CDX93702	Canola	cytosol	85.66	85.66
Bra014161.1-P	Field mustard	cytosol	85.66	85.48
CDX77276	Canola	cytosol	85.45	85.28
HORVU2Hr1G020570.1	Barley	plasma membrane	82.83	82.5
TraesCS1B01G340600.1	Wheat	golgi, plastid	82.63	82.29
TraesCS1A01G327200.1	Wheat	cytosol	82.63	82.29
HORVU3Hr1G075590.1	Barley	cytosol	31.72	81.77
TraesCS1D01G329300.1	Wheat	cytosol	82.02	81.69
AT1G15310.1	Thale cress	cytosol	78.79	81.42
HORVU1Hr1G077990.4	Barley	cytosol	82.42	80.95
HORVU6Hr1G029680.1	Barley	cytosol	30.71	79.17
HORVU5Hr1G019120.2	Barley	cytosol	30.71	79.17
Bra026145.1-P	Field mustard	cytosol	76.57	79.12
CDY36546	Canola	cytosol	76.16	78.71
CDY39632	Canola	cytosol	75.96	78.33
HORVU2Hr1G125480.2	Barley	cytosol	31.11	78.17
AT5G49500.1	Thale cress	cytosol	77.78	77.46
HORVU7Hr1G036330.1	Barley	cytosol	37.17	76.35
Os05t0509500-01	Rice	plasma membrane	73.13	74.95
TraesCS3D01G308700.1	Wheat	cytosol, mitochondrion	73.13	74.79
HORVU2Hr1G097520.1	Barley	cytosol	33.54	74.77
Solyc03g116810.2.1	Tomato	nucleus	88.48	74.24
TraesCS3B01G342900.1	Wheat	cytosol	72.53	74.17
TraesCS3A01G322800.1	Wheat	mitochondrion	72.53	74.17
TraesCS1A01G327300.1	Wheat	cytosol	73.74	74.04
TraesCS1B01G340700.1	Wheat	cytosol	73.33	73.48
CDY10656	Canola	cytosol	28.89	72.96
EES19782	Sorghum	cytosol	70.71	72.61
Zm00001d038661_P001	Maize	cytosol	68.08	69.92
KXG37974	Sorghum	cytosol	60.0	66.59
KXG37972	Sorghum	cytosol	59.6	66.14
KXG34125	Sorghum	cytosol	56.57	56.34
CDY46694	Canola	cytosol	27.07	43.23
CDY17067	Canola	cytosol, nucleus	28.08	43.03
AT5G66970.1	Thale cress	cytosol	14.75	41.71
Bra014039.1-P	Field mustard	cytosol	33.94	40.88
VIT_08s0007g03160.t01	Wine grape	plastid	27.47	23.99
VIT_15s0048g02080.t01	Wine grape	plastid	16.97	22.89
VIT_11s0037g00300.t01	Wine grape	endoplasmic reticulum	17.58	14.12

Protein Annotations

Gene3D:1.10.260.30	Gene3D:1.20.120.140	EntrezGene:100261219	wikigene:100261219	MapMan:23.3.1.1.5	Gene3D:3.40.50.300
InterPro:AAA+_ATPase	ProteinID:CCB59627	ProteinID:CCB59627.1	UniProt:F6HXF7	EMBL:FN596494	GO:GO:0000166
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488
GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005786
GO:GO:0006614	GO:GO:0006810	GO:GO:0008150	GO:GO:0008312	GO:GO:0016787	GO:GO:0030529
GO:GO:0045047	GO:GO:0048500	InterPro:IPR036891	EntrezGene:LOC100261219	wikigene:LOC100261219	HAMAP:MF_00306
InterPro:P-loop_NTPase	PFAM:PF00448	PFAM:PF02881	PFAM:PF02978	ScanProsite:PS00300	PANTHER:PTHR11564
PANTHER:PTHR11564:SF5	SMART:SM00382	SMART:SM00962	SMART:SM00963	InterPro:SRP/SRP_N	InterPro:SRP54
InterPro:SRP54_GTPase_dom	InterPro:SRP54_euk	SUPFAM:SSF47364	SUPFAM:SSF47446	SUPFAM:SSF52540	InterPro:Signal_recog_part_SRP54_M_sf
InterPro:Signal_recog_particl_SRP54_hlx	InterPro:Signal_recog_particle_SRP54_M	TIGR:TC53883	TIGR:TC60536	TIGRFAMs:TIGR01425	UniParc:UPI00015CCE89
ArrayExpress:VIT_09s0002g07290	EnsemblPlantsGene:VIT_09s0002g07290	EnsemblPlants:VIT_09s0002g07290.t01	unigene:Vvi.5343	RefSeq:XP_002264159	RefSeq:XP_002264159.1
SEG:seg	:	:	:	:	:

Description

Signal recognition particle 54 kDa protein [Source:UniProtKB/TrEMBL;Acc:F6HXF7]

Coordinates

chr9:+:7318152..7337035

Molecular Weight (calculated)

55297.9 Da

IEP (calculated)

9.823

GRAVY (calculated)

-0.310

Length

495 amino acids

Sequence
(BLAST)

001: MVLSELGGSI SRALQQMSNA TIIDEKVLNE CLNEITRALL QSDVQFKLVR DMQTNIKKLV NFDDLAAGHN KRKIIQQAIF QELCKMLDPG KPSFTPKKGK
101: TSVVMFVGLQ GSGKTTTCTK YAYYHQKKGW KPALVCADTF RAGAFDQLKQ NATKAKIPFY GSYMESDPVK IAVEGVERFK KENCDLIIVD TSGRHKQEAA
201: LFEEMRQVSE ATRPDLVIFV MDSSIGQAAF DQAQAFRQSV AVGAVIITKM DGHAKGGGAL SAVAATKSPV IFIGTGEHMD EFEVFDVKPF VSRLLGMGDW
301: SGFMDKIHEV VPMDQQPELL QKLSEGNFTL RIMYEQFQNI LKMGPIGQVF SMLPGFSAEL MPKGREKESQ AKIKRYMTMM DSMTNEELDT SNPKLMNESR
401: IMRIARGSGR QVREVMEMLE EYKRLAKIWS KMKGLKIPKK GEMSALSRNM NAQHMSKIIP QQMLKQIGGM GALQNLMKQV GNNKDMLGMF GGGDK

Best Arabidopsis Sequence Match ( AT1G48900.1 )
(BLAST)

001: MVLAELGGRI TRAIQQMSNV TIIDEKALNE CLNEITRALL QSDVSFPLVK EMQSNIKKIV NLEDLAAGHN KRRIIEQAIF SELCKMLDPG KPAFAPKKAK
101: ASVVMFVGLQ GAGKTTTCTK YAYYHQKKGY KPALVCADTF RAGAFDQLKQ NATKAKIPFY GSYTESDPVK IAVEGVDTFK KENCDLIIVD TSGRHKQEAS
201: LFEEMRQVAE ATKPDLVIFV MDSSIGQAAF DQAQAFKQSV AVGAVIITKM DGHAKGGGAL SAVAATKSPV IFIGTGEHMD EFEVFDVKPF VSRLLGMGDW
301: SGFVDKLQEV VPKDQQPELL EKLSQGNFTL RIMYDQFQNI LNMGPLKEVF SMLPGISAEM MPKGHEKESQ AKIKRYMTMM DSMTNDELDS SNPKVFNESR
401: MMRIARGSGR QVREVMEMLE EYKRLAKIWS KMKGLKIPKN GDMSALSRNM NAQHMSKVLP PQMLKQIGGM GGLQSLMKQM GSGKDMMGMF GGGDK

Arabidopsis Description

SRP-54CSignal recognition particle 54 kDa protein 3 [Source:UniProtKB/Swiss-Prot;Acc:P49967]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.