CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX93702	Canola	cytosol	100.0	100.0
Bra014161.1-P	Field mustard	cytosol	97.58	97.38
CDX77276	Canola	cytosol	97.17	96.98
CDY16472	Canola	cytosol	76.57	96.68
AT1G48900.1	Thale cress	cytosol	94.95	94.95
KRH44479	Soybean	cytosol	87.07	87.07
KRH47429	Soybean	cytosol, endoplasmic reticulum, nucleus	86.87	86.87
Solyc12g042740.1.1	Tomato	cytosol	86.67	85.97
KRH09713	Soybean	cytosol	86.67	85.97
KRH23593	Soybean	cytosol	86.67	85.8
CDY10656	Canola	cytosol	33.94	85.71
VIT_09s0002g07290.t01	Wine grape	cytosol	85.66	85.66
GSMUA_Achr8P03120_001	Banana	cytosol	85.66	85.31
PGSC0003DMT400001674	Potato	cytosol	85.45	85.11
PGSC0003DMT400073698	Potato	cytosol	85.45	84.77
Os01t0772800-01	Rice	plasma membrane	83.64	83.47
CDY39632	Canola	cytosol	80.81	83.33
EES01544	Sorghum	cytosol	83.43	83.27
CDY36546	Canola	cytosol	80.4	83.09
Zm00001d012652_P003	Maize	extracellular	83.43	82.6
Zm00001d043303_P001	Maize	cytosol	81.62	81.78
TraesCS1B01G340600.1	Wheat	golgi, plastid	78.59	78.27
HORVU2Hr1G020570.1	Barley	plasma membrane	78.59	78.27
HORVU6Hr1G029680.1	Barley	cytosol	30.3	78.12
HORVU5Hr1G019120.2	Barley	cytosol	30.3	78.12
TraesCS1D01G329300.1	Wheat	cytosol	78.38	78.07
HORVU2Hr1G125480.2	Barley	cytosol	30.51	76.65
HORVU1Hr1G077990.4	Barley	cytosol	77.98	76.59
HORVU3Hr1G075590.1	Barley	cytosol	29.49	76.04
HORVU7Hr1G036330.1	Barley	cytosol	35.56	73.03
Solyc03g116810.2.1	Tomato	nucleus	85.45	71.69
Os05t0509500-01	Rice	plasma membrane	69.49	71.22
TraesCS3D01G308700.1	Wheat	cytosol, mitochondrion	68.48	70.04
TraesCS1B01G340700.1	Wheat	cytosol	69.9	70.04
HORVU2Hr1G097520.1	Barley	cytosol	31.31	69.82
EES19782	Sorghum	cytosol	67.88	69.71
TraesCS3B01G342900.1	Wheat	cytosol	67.88	69.42
Zm00001d038661_P001	Maize	cytosol	65.66	67.43
KXG37974	Sorghum	cytosol	57.98	64.35
KXG37972	Sorghum	cytosol	57.58	63.9
GSMUA_Achr9P25680_001	Banana	cytosol	50.3	57.11
KXG34125	Sorghum	cytosol	54.75	54.53
CDY46694	Canola	cytosol	26.67	42.58
CDY17067	Canola	cytosol, nucleus	27.68	42.41
CDY41424	Canola	plastid	27.07	23.72
CDX70273	Canola	plastid	27.07	23.67
CDY14166	Canola	plastid	26.46	23.23
CDY04905	Canola	plastid	26.46	23.23
CDY18901	Canola	plastid	16.77	22.99
CDX74765	Canola	plastid	16.77	22.55
CDY27360	Canola	plastid	16.57	22.34
CDY37064	Canola	plastid	16.57	22.28
CDY14165	Canola	plastid	7.88	17.33
CDY39221	Canola	cytosol, endoplasmic reticulum	17.37	13.98
CDX72255	Canola	cytosol, endoplasmic reticulum	17.37	13.96
CDY28196	Canola	endoplasmic reticulum	17.37	13.83
CDX68673	Canola	extracellular	17.37	13.69

Protein Annotations

Gene3D:1.10.260.30	Gene3D:1.20.120.140	MapMan:23.3.1.1.5	Gene3D:3.40.50.300	GO:A0A078HSD9	UniProt:A0A078HSD9
InterPro:AAA+_ATPase	EnsemblPlants:CDY40616	ProteinID:CDY40616	ProteinID:CDY40616.1	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005786	GO:GO:0006614
GO:GO:0006810	GO:GO:0008150	GO:GO:0008312	GO:GO:0016787	GO:GO:0030529	GO:GO:0045047
GO:GO:0048500	EnsemblPlantsGene:GSBRNA2T00071459001	InterPro:IPR036891	HAMAP:MF_00306	InterPro:P-loop_NTPase	PFAM:PF00448
PFAM:PF02881	PFAM:PF02978	ScanProsite:PS00300	PANTHER:PTHR11564	PANTHER:PTHR11564:SF5	SMART:SM00382
SMART:SM00962	SMART:SM00963	InterPro:SRP/SRP_N	InterPro:SRP54	InterPro:SRP54_GTPase_dom	InterPro:SRP54_euk
SUPFAM:SSF47364	SUPFAM:SSF47446	SUPFAM:SSF52540	InterPro:Signal_recog_part_SRP54_M_sf	InterPro:Signal_recog_particl_SRP54_hlx	InterPro:Signal_recog_particle_SRP54_M
TIGRFAMs:TIGR01425	UniParc:UPI0004EC752B	SEG:seg	:	:	:

Description

BnaC06g02320DSignal recognition particle 54 kDa protein [Source:UniProtKB/TrEMBL;Acc:A0A078HSD9]

Coordinates

chrLK032475:-:266992..269746

Molecular Weight (calculated)

54749.2 Da

IEP (calculated)

9.633

GRAVY (calculated)

-0.267

Length

495 amino acids

Sequence
(BLAST)

001: MVLAELGGQI ASALQKMSNV TIIDEKALNE CLKEITRALL HSDVSFPLVR EMQNNIKKIV NLEELAAGHN KRRIIEQAIF SELCKMLDPG KPAFSPKKAK
101: PSVVMFVGLQ GAGKTTTCTK YAYYHQKKGY KPALVCADTF RAGAFDQLKQ NATKARIPFY GSYTESDPVK IAVEGVDTFK KENCDLIIVD TSGRHKQEAT
201: LFEEMRQVAE ATKPDLVIFV MDSSIGQAAF DQAQAFKQSV AVGAVIITKM DGHAKGGGAL SAVAATKSPV IFIGTGEHMD EFEVFDVKPF VSRLLGMGDW
301: SGFVDKLQDV VPKNQQPELL EKLSQGTFTL RIMYDQFQNI LNMGPLKEVF SMLPGGAADM MPKGHEKESQ AKVKRYMTMM DSMTNEELDS SNPKVFNESR
401: MMRIARGSGR LVREVMEMLE EYKRLAKIWS KMKGLKIPKS GDMSALSRNM NAQHMSKVLP PQMLKQIGGM GGLQSLMKQM GSGKDMMGMF GGKDK

Best Arabidopsis Sequence Match ( AT1G48900.1 )
(BLAST)

001: MVLAELGGRI TRAIQQMSNV TIIDEKALNE CLNEITRALL QSDVSFPLVK EMQSNIKKIV NLEDLAAGHN KRRIIEQAIF SELCKMLDPG KPAFAPKKAK
101: ASVVMFVGLQ GAGKTTTCTK YAYYHQKKGY KPALVCADTF RAGAFDQLKQ NATKAKIPFY GSYTESDPVK IAVEGVDTFK KENCDLIIVD TSGRHKQEAS
201: LFEEMRQVAE ATKPDLVIFV MDSSIGQAAF DQAQAFKQSV AVGAVIITKM DGHAKGGGAL SAVAATKSPV IFIGTGEHMD EFEVFDVKPF VSRLLGMGDW
301: SGFVDKLQEV VPKDQQPELL EKLSQGNFTL RIMYDQFQNI LNMGPLKEVF SMLPGISAEM MPKGHEKESQ AKIKRYMTMM DSMTNDELDS SNPKVFNESR
401: MMRIARGSGR QVREVMEMLE EYKRLAKIWS KMKGLKIPKN GDMSALSRNM NAQHMSKVLP PQMLKQIGGM GGLQSLMKQM GSGKDMMGMF GGGDK

Arabidopsis Description

SRP-54CSignal recognition particle 54 kDa protein 3 [Source:UniProtKB/Swiss-Prot;Acc:P49967]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.