CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
mitochondrion 3
nucleus 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY17067	Canola	cytosol, nucleus	100.0	95.98
Bra014039.1-P	Field mustard	cytosol	98.06	73.97
HORVU2Hr1G125480.2	Barley	cytosol	28.39	44.67
HORVU5Hr1G019120.2	Barley	cytosol	27.1	43.75
HORVU6Hr1G029680.1	Barley	cytosol	27.1	43.75
HORVU3Hr1G075590.1	Barley	cytosol	23.23	37.5
HORVU7Hr1G036330.1	Barley	cytosol	27.42	35.27
CDY16472	Canola	cytosol	42.58	33.67
TraesCS3B01G342900.1	Wheat	cytosol	44.19	28.31
KXG37972	Sorghum	cytosol	40.65	28.25
KXG37974	Sorghum	cytosol	40.65	28.25
TraesCS3D01G308700.1	Wheat	cytosol, mitochondrion	43.87	28.1
KRH44479	Soybean	cytosol	44.19	27.68
EES19782	Sorghum	cytosol	42.9	27.59
KRH47429	Soybean	cytosol, endoplasmic reticulum, nucleus	43.87	27.47
PGSC0003DMT400073698	Potato	cytosol	44.19	27.45
Solyc12g042740.1.1	Tomato	cytosol	44.19	27.45
Os01t0772800-01	Rice	plasma membrane	43.87	27.42
Os05t0509500-01	Rice	plasma membrane	42.58	27.33
VIT_09s0002g07290.t01	Wine grape	cytosol	43.23	27.07
EES01544	Sorghum	cytosol	43.23	27.02
GSMUA_Achr8P03120_001	Banana	cytosol	43.23	26.96
Zm00001d012652_P003	Maize	extracellular	43.23	26.8
TraesCS1B01G340700.1	Wheat	cytosol	42.58	26.72
CDY40616	Canola	cytosol	42.58	26.67
CDX93702	Canola	cytosol	42.58	26.67
KRH09713	Soybean	cytosol	42.9	26.65
CDX77276	Canola	cytosol	42.58	26.61
KRH23593	Soybean	cytosol	42.9	26.6
PGSC0003DMT400001674	Potato	cytosol	42.58	26.56
Zm00001d043303_P001	Maize	cytosol	42.26	26.52
CDY39632	Canola	cytosol	40.97	26.46
CDY36546	Canola	cytosol	40.65	26.3
TraesCS1B01G340600.1	Wheat	golgi, plastid	41.94	26.16
HORVU2Hr1G097520.1	Barley	cytosol	18.71	26.13
HORVU2Hr1G020570.1	Barley	plasma membrane	41.61	25.96
TraesCS1D01G329300.1	Wheat	cytosol	41.61	25.96
Zm00001d038661_P001	Maize	cytosol	40.32	25.93
HORVU1Hr1G077990.4	Barley	cytosol	41.29	25.4
AT5G66970.1	Thale cress	cytosol	13.55	24.0
KXG34125	Sorghum	cytosol	38.39	23.94
Solyc03g116810.2.1	Tomato	nucleus	42.9	22.54
TraesCS1A01G075500.1	Wheat	golgi	26.13	20.2
GSMUA_Achr9P25680_001	Banana	cytosol	28.06	19.95
CDY10656	Canola	cytosol	10.65	16.84
CDY18901	Canola	plastid	15.48	13.3
CDX74765	Canola	plastid	15.48	13.04
CDY27360	Canola	plastid	15.16	12.81
CDY37064	Canola	plastid	15.16	12.77
CDY41424	Canola	plastid	21.61	11.86
CDX70273	Canola	plastid	21.61	11.84
CDY04905	Canola	plastid	20.65	11.35
CDY14166	Canola	plastid	20.32	11.17
CDY39221	Canola	cytosol, endoplasmic reticulum	16.77	8.46
CDX72255	Canola	cytosol, endoplasmic reticulum	16.77	8.44
CDY28196	Canola	endoplasmic reticulum	16.77	8.36
CDX68673	Canola	extracellular	16.77	8.28
CDY14165	Canola	plastid	2.58	3.56

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	GO:A0A078IBH5	UniProt:A0A078IBH5	EnsemblPlants:CDY46694	ProteinID:CDY46694
ProteinID:CDY46694.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824
GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006614	GO:GO:0006810	GO:GO:0008150	GO:GO:0008312	GO:GO:0016787
GO:GO:0048500	EnsemblPlantsGene:GSBRNA2T00085999001	InterPro:IPR036891	InterPro:P-loop_NTPase	PFAM:PF00448	PFAM:PF02978
PANTHER:PTHR11564	PANTHER:PTHR11564:SF5	SMART:SM00962	InterPro:SRP54	InterPro:SRP54_GTPase_dom	SUPFAM:SSF47446
SUPFAM:SSF52540	InterPro:Signal_recog_part_SRP54_M_sf	InterPro:Signal_recog_particle_SRP54_M	UniParc:UPI0004EE9F78	SEG:seg	:

Description

BnaA03g48140DBnaA03g48140D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IBH5]

Coordinates

chrLK032681:-:181649..183126

Molecular Weight (calculated)

35186.8 Da

IEP (calculated)

9.583

GRAVY (calculated)

-0.290

Length

310 amino acids

Sequence
(BLAST)

001: MFIGLQGSEK SYTCARYARY HMTMGFKPAL VCADTFAIDA FDLLKKASKD KVPVYRSRKR DPAKIASGGI AKLRKHNRDF IVVDTTSRHT ECFALLVEMR
101: RLANAVKPDL VIFVIDGSVG KDAFEQARAF RESFPAGVAI VTKINTYPKS FGALAAVAAA ECPMIYSTKG EKGEEFKVFE AESFVRQLMP ANQDHEREDN
201: TPEFAYTLRK MHAYFSKACQ GKVLSGPRPL VDIPTMKLYI QIMDNMTSEE LEKSEISKER MVHLAEQSNV DVIQVVGMMT VYKRKAKAWL EIEERMGKLN
301: SIYNKWYLQK

Best Arabidopsis Sequence Match ( AT1G15310.1 )
(BLAST)

001: MVLAELGGRI TRAIQQMNNV TIIDEKVLND FLNEITRALL QSDVSFGLVE KMQTNIKKIV NLDDLAAGHN KRLIIEQAIF KELCRMLDPG KPAFAPKKAK
101: PSVVMFVGLQ GAGKTTTCTK YAYYHQKKGY KAALVCADTF RAGAFDQLKQ NATKAKIPFY GSYTESDPVK IAVEGVDRFK KEKCDLIIVD TSGRHKQAAS
201: LFEEMRQVAE ATEPDLVIFV MDSSIGQAAF EQAEAFKETV SVGAVIITKM DGHAKGGGAL SAVAATKSPV IFIGTGEHMD EFEVFDVKPF VSRLLGKGDW
301: SGLVDKLQEV VPKDLQNELV ENLSQGNFTL RSMYDQFQCS LRIPLNQLFS MLPGISAEMM PKGHGEESRV KMKRYMTMMD SMTNKELDSP NPKIFNESRI
401: MRIARGSGRL VREVMEMLEE YKRIAKTMKG IKIPKNGDMS KVIPPQMLKQ MGGMSGLQSL MKQMGSAKDM MGMFGGGGK

Arabidopsis Description

SRP-54ASignal recognition particle 54 kDa protein [Source:UniProtKB/TrEMBL;Acc:Q56XJ0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.