Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU2Hr1G097520.1 | Barley | cytosol | 36.57 | 28.83 |
| HORVU7Hr1G036330.1 | Barley | cytosol | 33.14 | 24.07 |
| HORVU6Hr1G029680.1 | Barley | cytosol | 25.14 | 22.92 |
| HORVU5Hr1G019120.2 | Barley | cytosol | 25.14 | 22.92 |
| HORVU2Hr1G125480.2 | Barley | cytosol | 25.14 | 22.34 |
| Bra014039.1-P | Field mustard | cytosol | 49.14 | 20.92 |
| KXG37972 | Sorghum | cytosol | 39.43 | 15.47 |
| KXG37974 | Sorghum | cytosol | 39.43 | 15.47 |
| AT1G15310.1 | Thale cress | cytosol | 42.29 | 15.45 |
| Solyc12g042740.1.1 | Tomato | cytosol | 43.43 | 15.23 |
| PGSC0003DMT400073698 | Potato | cytosol | 43.43 | 15.23 |
| AT1G48900.1 | Thale cress | cytosol | 42.86 | 15.15 |
| Zm00001d038661_P001 | Maize | cytosol | 41.71 | 15.15 |
| CDY17067 | Canola | cytosol, nucleus | 27.43 | 14.86 |
| KRH44479 | Soybean | cytosol | 41.71 | 14.75 |
| VIT_09s0002g07290.t01 | Wine grape | cytosol | 41.71 | 14.75 |
| EES19782 | Sorghum | cytosol | 40.57 | 14.73 |
| PGSC0003DMT400001674 | Potato | cytosol | 41.71 | 14.69 |
| TraesCS1D01G329300.1 | Wheat | cytosol | 41.71 | 14.69 |
| Zm00001d043303_P001 | Maize | cytosol | 41.14 | 14.57 |
| KRH47429 | Soybean | cytosol, endoplasmic reticulum, nucleus | 41.14 | 14.55 |
| HORVU2Hr1G020570.1 | Barley | plasma membrane | 41.14 | 14.49 |
| TraesCS1B01G340600.1 | Wheat | golgi, plastid | 41.14 | 14.49 |
| TraesCS3D01G308700.1 | Wheat | cytosol, mitochondrion | 40.0 | 14.46 |
| KRH09713 | Soybean | cytosol | 41.14 | 14.43 |
| KRH23593 | Soybean | cytosol | 41.14 | 14.4 |
| Zm00001d012652_P003 | Maize | extracellular | 41.14 | 14.4 |
| EES01544 | Sorghum | cytosol | 40.57 | 14.31 |
| TraesCS3B01G342900.1 | Wheat | cytosol | 39.43 | 14.26 |
| Os01t0772800-01 | Rice | plasma membrane | 40.0 | 14.11 |
| HORVU1Hr1G077990.4 | Barley | cytosol | 40.57 | 14.09 |
| AT5G49500.1 | Thale cress | cytosol | 40.0 | 14.08 |
| GSMUA_Achr8P03120_001 | Banana | cytosol | 40.0 | 14.08 |
| TraesCS1B01G340700.1 | Wheat | cytosol | 39.43 | 13.97 |
| Os05t0509500-01 | Rice | plasma membrane | 38.29 | 13.87 |
| CDY46694 | Canola | cytosol | 24.0 | 13.55 |
| KXG34125 | Sorghum | cytosol | 37.71 | 13.28 |
| Solyc03g116810.2.1 | Tomato | nucleus | 41.71 | 12.37 |
| TraesCS1A01G075500.1 | Wheat | golgi | 28.0 | 12.22 |
| GSMUA_Achr9P25680_001 | Banana | cytosol | 28.0 | 11.24 |
| AT2G45770.1 | Thale cress | plastid | 19.43 | 9.29 |
| AT5G03940.1 | Thale cress | plastid | 22.86 | 7.09 |
| AT4G30600.1 | Thale cress | endoplasmic reticulum | 18.29 | 5.05 |
| HORVU3Hr1G075590.1 | Barley | cytosol | 3.43 | 3.12 |
Protein Annotations
| Gene3D:1.20.120.140 | Gene3D:3.40.50.300 | MapMan:35.1 | EntrezGene:836831 | ProteinID:AED98285.1 | ArrayExpress:AT5G66970 |
| EnsemblPlantsGene:AT5G66970 | RefSeq:AT5G66970 | TAIR:AT5G66970 | RefSeq:AT5G66970-TAIR-G | EnsemblPlants:AT5G66970.1 | TAIR:AT5G66970.1 |
| Unigene:At.55720 | EMBL:DQ447113 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0003824 | GO:GO:0003924 | GO:GO:0004252 | GO:GO:0005488 | GO:GO:0005525 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006508 | GO:GO:0006614 | GO:GO:0006810 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008236 | GO:GO:0008312 | GO:GO:0016787 | GO:GO:0019538 |
| GO:GO:0048500 | GO:GO:0070008 | RefSeq:NP_201498.2 | InterPro:P-loop_NTPase | PFAM:PF00448 | PO:PO:0000084 |
| PO:PO:0003011 | PANTHER:PTHR11564 | PANTHER:PTHR11564:SF5 | UniProt:Q1PDF5 | InterPro:SRP/SRP_N | InterPro:SRP54 |
| InterPro:SRP54_GTPase_dom | SUPFAM:SSF47364 | SUPFAM:SSF52540 | UniParc:UPI0000D5BD3C | : | : |
Description
P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q1PDF5]
Coordinates
chr5:-:26740445..26741125
Molecular Weight (calculated)
19807.6 Da
IEP (calculated)
9.917
GRAVY (calculated)
-0.147
Length
175 amino acids
Sequence
(BLAST)
(BLAST)
001: MALEEVRGRI GRSFEEMNKT SNMDCTKLKS CLNEITCALL DADIPRLAVD EIETKSLEII NLPKAPKKKG ALIYMMMLQE LSSKLDPGKS ALIRGKLEPS
101: IVMFIGLRGV DKTKTCAKYA RYHRKKGFRP ALVCADTFKF DAFVRLNKAA KDEVPVYARY IYIEYFKLKL LSGVS
101: IVMFIGLRGV DKTKTCAKYA RYHRKKGFRP ALVCADTFKF DAFVRLNKAA KDEVPVYARY IYIEYFKLKL LSGVS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.