Factsheet for HORVU1Hr1G077990.4

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
Predotar:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU2Hr1G020570.1	Barley	plasma membrane	98.02	99.4
TraesCS1A01G327200.1	Wheat	cytosol	97.42	98.79
TraesCS1B01G340600.1	Wheat	golgi, plastid	97.42	98.79
TraesCS1D01G329300.1	Wheat	cytosol	96.43	97.79
KRH09713	Soybean	cytosol	82.14	82.97
KRH47429	Soybean	cytosol, endoplasmic reticulum, nucleus	81.35	82.83
KRH44479	Soybean	cytosol	80.95	82.42
VIT_09s0002g07290.t01	Wine grape	cytosol	80.95	82.42
Solyc12g042740.1.1	Tomato	cytosol	81.55	82.36
KRH23593	Soybean	cytosol	81.55	82.2
PGSC0003DMT400073698	Potato	cytosol	80.75	81.56
PGSC0003DMT400001674	Potato	cytosol	80.36	81.49
HORVU3Hr1G075590.1	Barley	cytosol	30.75	80.73
CDY16472	Canola	cytosol	62.7	80.61
Os05t0509500-01	Rice	plasma membrane	77.18	80.54
AT1G48900.1	Thale cress	cytosol	77.98	79.39
CDX77276	Canola	cytosol	77.58	78.83
Bra014161.1-P	Field mustard	cytosol	77.58	78.83
HORVU6Hr1G029680.1	Barley	cytosol	29.96	78.65
HORVU5Hr1G019120.2	Barley	cytosol	29.96	78.65
CDY40616	Canola	cytosol	76.59	77.98
Bra018760.1-P	Field mustard	cytosol	76.59	77.98
CDX93702	Canola	cytosol	76.59	77.98
HORVU2Hr1G125480.2	Barley	cytosol	30.36	77.67
HORVU2Hr1G097520.1	Barley	cytosol	33.73	76.58
HORVU7Hr1G036330.1	Barley	cytosol	36.11	75.52
AT1G15310.1	Thale cress	cytosol	71.63	75.37
EES19782	Sorghum	cytosol	70.83	74.07
Bra026145.1-P	Field mustard	cytosol	69.84	73.49
CDY39632	Canola	cytosol	69.84	73.33
CDY36546	Canola	cytosol	69.64	73.28
Zm00001d038661_P001	Maize	cytosol	69.44	72.61
AT5G49500.1	Thale cress	cytosol	70.04	71.03
Solyc03g116810.2.1	Tomato	nucleus	80.36	68.64
CDY10656	Canola	cytosol	26.39	67.86
KXG37974	Sorghum	cytosol	59.33	67.04
KXG37972	Sorghum	cytosol	59.13	66.82
KXG34125	Sorghum	cytosol	57.94	58.75
GSMUA_Achr9P25680_001	Banana	cytosol	49.8	57.57
CDY17067	Canola	cytosol, nucleus	26.59	41.49
CDY46694	Canola	cytosol	25.4	41.29
AT5G66970.1	Thale cress	cytosol	14.09	40.57
Bra014039.1-P	Field mustard	cytosol	31.55	38.69
HORVU4Hr1G021950.4	Barley	plastid	26.79	24.32
HORVU4Hr1G021960.1	Barley	plastid	24.6	22.1
HORVU3Hr1G110160.4	Barley	mitochondrion	16.67	21.05
HORVU6Hr1G018280.1	Barley	cytosol, endoplasmic reticulum	16.87	13.43

Protein Annotations

Gene3D:1.10.260.30	Gene3D:1.20.120.140	MapMan:23.3.1.1.5	Gene3D:3.40.50.300	UniProt:A0A287GCS4	InterPro:AAA+_ATPase
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0003924
GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005786	GO:GO:0006614	GO:GO:0006810	GO:GO:0008150	GO:GO:0008312	GO:GO:0016787
GO:GO:0045047	GO:GO:0048500	EnsemblPlantsGene:HORVU1Hr1G077990	EnsemblPlants:HORVU1Hr1G077990.4	InterPro:IPR036891	HAMAP:MF_00306
InterPro:P-loop_NTPase	PFAM:PF00448	PFAM:PF02881	PFAM:PF02978	ScanProsite:PS00300	PANTHER:PTHR11564
PANTHER:PTHR11564:SF5	SMART:SM00382	SMART:SM00962	SMART:SM00963	InterPro:SRP/SRP_N	InterPro:SRP54
InterPro:SRP54_GTPase_dom	InterPro:SRP54_euk	SUPFAM:SSF47364	SUPFAM:SSF47446	SUPFAM:SSF52540	InterPro:Signal_recog_part_SRP54_M_sf
InterPro:Signal_recog_particl_SRP54_hlx	InterPro:Signal_recog_particle_SRP54_M	TIGRFAMs:TIGR01425	UniParc:UPI000B482118	SEG:seg	:

Description

Signal recognition particle 54 kDa protein [Source:UniProtKB/TrEMBL;Acc:A0A287GCS4]

Coordinates

chrchr1H:+:518982559..518986647

Molecular Weight (calculated)

55152.7 Da

IEP (calculated)

9.840

GRAVY (calculated)

-0.204

Length

504 amino acids

Sequence
(BLAST)

001: MVLAQLGGSI SRALAQMSNA TVIDEKVLGE CLNEISRALL QSDVQFKMVR DMQTNIRKIV NLETLAAGTN KRPPPYANSI SIQQAVFTEL CNMLDPGKPA
101: FTPKKGKPSV VMFVGLQGSG KTTTCTKYAY FHQRKGFKPS LVCADTFRAG AFDQLKQNAT KAKIPFYGSY MESDPVKIAV EGLERFRKEN SDLIIIDTSG
201: RHKQEAALFE EMRQVAEATK PDLVIFVMDG SIGQAAFDQA QAFKQSASVG AVIITKLDGH AKGGGALSAV AATKSPVIFI GTGEHIDEFE IFDVKPFVSR
301: LLGMGDLSGL MDKIQDVMPA DQQPELLAKL AEGTFTLRLL YEQFQNLLKM GPIGQVFSML PGFSSELMPK GHEKEGQAKI KRYMTIMDSM TAAELDSTNP
401: KLMTESRIIR IARGSGRQIR DVTDMLEEYK RLAKMWSKMK GLKMPKNGKM SDLSQNLNIQ QMTKALPPQV LKQMGGMGGL QALMKQMGGK DMSKMLGGMG
501: LGGD

Best Arabidopsis Sequence Match ( AT1G48900.1 )
(BLAST)

001: MVLAELGGRI TRAIQQMSNV TIIDEKALNE CLNEITRALL QSDVSFPLVK EMQSNIKKIV NLEDLAAGHN KRRIIEQAIF SELCKMLDPG KPAFAPKKAK
101: ASVVMFVGLQ GAGKTTTCTK YAYYHQKKGY KPALVCADTF RAGAFDQLKQ NATKAKIPFY GSYTESDPVK IAVEGVDTFK KENCDLIIVD TSGRHKQEAS
201: LFEEMRQVAE ATKPDLVIFV MDSSIGQAAF DQAQAFKQSV AVGAVIITKM DGHAKGGGAL SAVAATKSPV IFIGTGEHMD EFEVFDVKPF VSRLLGMGDW
301: SGFVDKLQEV VPKDQQPELL EKLSQGNFTL RIMYDQFQNI LNMGPLKEVF SMLPGISAEM MPKGHEKESQ AKIKRYMTMM DSMTNDELDS SNPKVFNESR
401: MMRIARGSGR QVREVMEMLE EYKRLAKIWS KMKGLKIPKN GDMSALSRNM NAQHMSKVLP PQMLKQIGGM GGLQSLMKQM GSGKDMMGMF GGGDK

Arabidopsis Description

SRP-54CSignal recognition particle 54 kDa protein 3 [Source:UniProtKB/Swiss-Prot;Acc:P49967]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.