CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX77276	Canola	cytosol	100.0	79.03
HORVU3Hr1G075590.1	Barley	cytosol	38.01	77.6
CDY40616	Canola	cytosol	96.68	76.57
CDX93702	Canola	cytosol	96.68	76.57
AT1G48900.1	Thale cress	cytosol	96.17	76.16
HORVU5Hr1G019120.2	Barley	cytosol	34.95	71.35
HORVU6Hr1G029680.1	Barley	cytosol	34.95	71.35
KRH47429	Soybean	cytosol, endoplasmic reticulum, nucleus	90.05	71.31
KRH44479	Soybean	cytosol	90.05	71.31
KRH09713	Soybean	cytosol	90.05	70.74
KRH23593	Soybean	cytosol	90.05	70.6
Solyc12g042740.1.1	Tomato	cytosol	88.78	69.74
HORVU2Hr1G125480.2	Barley	cytosol	34.95	69.54
VIT_09s0002g07290.t01	Wine grape	cytosol	87.76	69.49
GSMUA_Achr8P03120_001	Banana	cytosol	87.5	69.01
PGSC0003DMT400073698	Potato	cytosol	87.76	68.94
PGSC0003DMT400001674	Potato	cytosol	86.99	68.61
EES01544	Sorghum	cytosol	86.48	68.35
Os01t0772800-01	Rice	plasma membrane	86.48	68.35
Zm00001d012652_P003	Maize	extracellular	86.22	67.6
Zm00001d043303_P001	Maize	cytosol	84.69	67.21
CDY39632	Canola	cytosol	81.38	66.46
CDY36546	Canola	cytosol	80.61	65.97
TraesCS1D01G329300.1	Wheat	cytosol	81.12	63.98
HORVU2Hr1G020570.1	Barley	plasma membrane	80.87	63.78
TraesCS1B01G340600.1	Wheat	golgi, plastid	80.87	63.78
HORVU1Hr1G077990.4	Barley	cytosol	80.61	62.7
TraesCS3D01G308700.1	Wheat	cytosol, mitochondrion	71.68	58.06
Os05t0509500-01	Rice	plasma membrane	71.43	57.97
Solyc03g116810.2.1	Tomato	nucleus	86.99	57.8
TraesCS3B01G342900.1	Wheat	cytosol	71.17	57.64
TraesCS1B01G340700.1	Wheat	cytosol	72.19	57.29
EES19782	Sorghum	cytosol	69.39	56.43
HORVU7Hr1G036330.1	Barley	cytosol	33.42	54.36
Zm00001d038661_P001	Maize	cytosol	66.07	53.73
KXG37974	Sorghum	cytosol	59.18	52.02
KXG37972	Sorghum	cytosol	58.67	51.57
GSMUA_Achr9P25680_001	Banana	cytosol	50.0	44.95
KXG34125	Sorghum	cytosol	56.38	44.47
CDY46694	Canola	cytosol	33.67	42.58
HORVU2Hr1G097520.1	Barley	cytosol	23.98	42.34
CDY17067	Canola	cytosol, nucleus	33.67	40.87
CDY10656	Canola	cytosol	19.13	38.27
CDY41424	Canola	plastid	28.32	19.65
CDX70273	Canola	plastid	28.32	19.61
CDY14166	Canola	plastid	27.81	19.33
CDY04905	Canola	plastid	27.81	19.33
CDY18901	Canola	plastid	16.33	17.73
CDY27360	Canola	plastid	16.33	17.44
CDY37064	Canola	plastid	16.33	17.39
CDX74765	Canola	plastid	16.33	17.39
CDY39221	Canola	cytosol, endoplasmic reticulum	17.09	10.89
CDX72255	Canola	cytosol, endoplasmic reticulum	17.09	10.88
CDY28196	Canola	endoplasmic reticulum	17.09	10.77
CDX68673	Canola	extracellular	17.09	10.67
CDY14165	Canola	plastid	4.34	7.56

Protein Annotations

Gene3D:1.10.260.30	MapMan:23.3.1.1.5	Gene3D:3.40.50.300	GO:A0A078FUF7	UniProt:A0A078FUF7	EnsemblPlants:CDY16472
ProteinID:CDY16472	ProteinID:CDY16472.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005786	GO:GO:0006614	GO:GO:0006810	GO:GO:0008150
GO:GO:0008312	GO:GO:0016787	GO:GO:0030529	GO:GO:0045047	GO:GO:0048500	EnsemblPlantsGene:GSBRNA2T00091044001
InterPro:IPR036891	InterPro:P-loop_NTPase	PFAM:PF00448	PFAM:PF02978	ScanProsite:PS00300	PANTHER:PTHR11564
PANTHER:PTHR11564:SF5	SMART:SM00962	InterPro:SRP54	InterPro:SRP54_GTPase_dom	InterPro:SRP54_euk	SUPFAM:SSF47446
SUPFAM:SSF52540	InterPro:Signal_recog_part_SRP54_M_sf	InterPro:Signal_recog_particle_SRP54_M	TIGRFAMs:TIGR01425	UniParc:UPI0004EE82AD	SEG:seg

Description

BnaA08g02950DSignal recognition particle 54 kDa protein [Source:UniProtKB/TrEMBL;Acc:A0A078FUF7]

Coordinates

chrLK032064:-:226807..229316

Molecular Weight (calculated)

43456.1 Da

IEP (calculated)

9.475

GRAVY (calculated)

-0.345

Length

392 amino acids

Sequence
(BLAST)

001: MFVGLQGAGK TTTCTKYAYY HQKKGYKPAL VCADTFRAGA FDQLKQNATK ARIPFYGSYT ESDPVKIAVE GVDTFKKENC DLIIVDTSGR HKQEATLFEE
101: MRQVAEATKP DLVIFVMDSS IGQAAFDQAQ AFKQSVAVGA VIITKMDGHA KGGGALSAVA ATKSPVIFIG TGEHMDEFEV FDVKPFVSRL LGMGDWSGFV
201: DKLQDVVPKD QQPELLEKLS QGNFTLRIMY DQFQNLLNMG PLSEVFSMLP GAAAQMMPKG HEKESQAKIK RYMTMMDSMT NEELDSSNPK MFNESRMMRI
301: ARGSGRMVRE VMEMLEEYKR LAKMWSKMKG LKIPKNGDMS ALSRNMNAQH MSKVLPPQML KQFGGMGGLQ SLMKQMGSGK DMMGMFGGGK DK

Best Arabidopsis Sequence Match ( AT5G49500.2 )
(BLAST)

001: MLIIIRRKGY KPALVCADTF RAGAFDQLKQ NATKSKIPYY GSYTGSDPVK IAVEGVDRFK KENCDLIIVD TSGRHKQQAS LFEEMRQISE ATKPDLVIFV
101: MDSSIGQTAF EQARAFKQTV AVGAVIITKM DGHAKGGGTL SAVAATKSPV IFIGTGEHMD EFEVFDAKPF VSRLLGNGDM SGFVNKLQEV VPKDQQPELL
201: EMLSHGKFTL RIMYDQFQNM LNMGPLKEVF SMLPGMRAEM MPEGHEKESQ AKIKRYMTMM DSMTNEELDS SNPKVFNESR IMRIARGSGR IVREVMEMLE
301: EYKRLTTMWG KVKGLKNLEK GNMSALSKNK NSQQLSKVLP AQMLKQIGGM SGLQSLMKQM GSGKDLMGMF GGRDE

Arabidopsis Description

SRP-54BSignal recognition particle 54 kDa protein 2 [Source:UniProtKB/Swiss-Prot;Acc:P49966]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.