Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY16472 | Canola | cytosol | 76.16 | 96.17 |
| Bra018760.1-P | Field mustard | cytosol | 95.15 | 95.15 |
| CDY40616 | Canola | cytosol | 94.95 | 94.95 |
| CDX93702 | Canola | cytosol | 94.95 | 94.95 |
| Bra014161.1-P | Field mustard | cytosol | 94.75 | 94.56 |
| CDX77276 | Canola | cytosol | 94.75 | 94.56 |
| KRH47429 | Soybean | cytosol, endoplasmic reticulum, nucleus | 88.89 | 88.89 |
| KRH44479 | Soybean | cytosol | 88.89 | 88.89 |
| AT1G15310.1 | Thale cress | cytosol | 85.66 | 88.52 |
| KRH09713 | Soybean | cytosol | 88.89 | 88.18 |
| KRH23593 | Soybean | cytosol | 88.89 | 88.0 |
| VIT_09s0002g07290.t01 | Wine grape | cytosol | 87.88 | 87.88 |
| Solyc12g042740.1.1 | Tomato | cytosol | 88.48 | 87.78 |
| GSMUA_Achr8P03120_001 | Banana | cytosol | 87.47 | 87.12 |
| PGSC0003DMT400073698 | Potato | cytosol | 87.27 | 86.57 |
| PGSC0003DMT400001674 | Potato | cytosol | 86.26 | 85.92 |
| AT5G49500.1 | Thale cress | cytosol | 86.06 | 85.71 |
| Os01t0772800-01 | Rice | plasma membrane | 85.25 | 85.08 |
| EES01544 | Sorghum | cytosol | 85.05 | 84.88 |
| Zm00001d012652_P003 | Maize | extracellular | 85.05 | 84.2 |
| Zm00001d043303_P001 | Maize | cytosol | 83.23 | 83.4 |
| HORVU2Hr1G020570.1 | Barley | plasma membrane | 80.0 | 79.68 |
| TraesCS1B01G340600.1 | Wheat | golgi, plastid | 80.0 | 79.68 |
| CDY10656 | Canola | cytosol | 31.52 | 79.59 |
| TraesCS1D01G329300.1 | Wheat | cytosol | 79.6 | 79.28 |
| HORVU1Hr1G077990.4 | Barley | cytosol | 79.39 | 77.98 |
| HORVU6Hr1G029680.1 | Barley | cytosol | 30.1 | 77.6 |
| HORVU5Hr1G019120.2 | Barley | cytosol | 30.1 | 77.6 |
| HORVU3Hr1G075590.1 | Barley | cytosol | 29.7 | 76.56 |
| HORVU2Hr1G125480.2 | Barley | cytosol | 30.3 | 76.14 |
| HORVU7Hr1G036330.1 | Barley | cytosol | 35.76 | 73.44 |
| Solyc03g116810.2.1 | Tomato | nucleus | 86.26 | 72.37 |
| Os05t0509500-01 | Rice | plasma membrane | 70.3 | 72.05 |
| TraesCS1B01G340700.1 | Wheat | cytosol | 71.72 | 71.86 |
| TraesCS3D01G308700.1 | Wheat | cytosol, mitochondrion | 70.1 | 71.69 |
| TraesCS3B01G342900.1 | Wheat | cytosol | 69.29 | 70.87 |
| HORVU2Hr1G097520.1 | Barley | cytosol | 31.31 | 69.82 |
| EES19782 | Sorghum | cytosol | 67.88 | 69.71 |
| Zm00001d038661_P001 | Maize | cytosol | 65.86 | 67.63 |
| KXG37974 | Sorghum | cytosol | 58.18 | 64.57 |
| KXG37972 | Sorghum | cytosol | 57.78 | 64.13 |
| GSMUA_Achr9P25680_001 | Banana | cytosol | 50.71 | 57.57 |
| KXG34125 | Sorghum | cytosol | 54.75 | 54.53 |
| AT5G66970.1 | Thale cress | cytosol | 15.15 | 42.86 |
| AT5G03940.1 | Thale cress | plastid | 26.06 | 22.87 |
| AT2G45770.1 | Thale cress | plastid | 16.57 | 22.4 |
| AT4G30600.1 | Thale cress | endoplasmic reticulum | 16.97 | 13.25 |
Protein Annotations
| Gene3D:1.10.260.30 | Gene3D:1.20.120.140 | MapMan:23.3.1.1.5 | Gene3D:3.40.50.300 | EntrezGene:841312 | UniProt:A0A178WMZ2 |
| InterPro:AAA+_ATPase | ProteinID:AAA66200.1 | ProteinID:AAG29734.1 | ProteinID:AEE32363.1 | EMBL:AF446864 | ArrayExpress:AT1G48900 |
| EnsemblPlantsGene:AT1G48900 | RefSeq:AT1G48900 | TAIR:AT1G48900 | RefSeq:AT1G48900-TAIR-G | EnsemblPlants:AT1G48900.1 | TAIR:AT1G48900.1 |
| EMBL:AY052331 | EMBL:AY054273 | Unigene:At.23838 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0003824 | GO:GO:0003924 | GO:GO:0004252 | GO:GO:0005488 | GO:GO:0005525 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005786 | GO:GO:0005829 |
| GO:GO:0006508 | GO:GO:0006614 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008236 |
| GO:GO:0008312 | GO:GO:0016787 | GO:GO:0019538 | GO:GO:0030529 | GO:GO:0045047 | GO:GO:0048500 |
| GO:GO:0070008 | InterPro:IPR036891 | HAMAP:MF_00306 | RefSeq:NP_564535.1 | ProteinID:OAP19647.1 | InterPro:P-loop_NTPase |
| UniProt:P49967 | PFAM:PF00448 | PFAM:PF02881 | PFAM:PF02978 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PO:PO:0025195 | PO:PO:0025281 | ScanProsite:PS00300 | PANTHER:PTHR11564 | PANTHER:PTHR11564:SF5 | SMART:SM00382 |
| SMART:SM00962 | SMART:SM00963 | InterPro:SRP/SRP_N | InterPro:SRP54 | InterPro:SRP54_GTPase_dom | InterPro:SRP54_euk |
| SUPFAM:SSF47364 | SUPFAM:SSF47446 | SUPFAM:SSF52540 | InterPro:Signal_recog_part_SRP54_M_sf | InterPro:Signal_recog_particl_SRP54_hlx | InterPro:Signal_recog_particle_SRP54_M |
| TIGRFAMs:TIGR01425 | UniParc:UPI0000135ED3 | SEG:seg | : | : | : |
Description
SRP-54CSignal recognition particle 54 kDa protein 3 [Source:UniProtKB/Swiss-Prot;Acc:P49967]
Coordinates
chr1:-:18084715..18087934
Molecular Weight (calculated)
54785.1 Da
IEP (calculated)
9.441
GRAVY (calculated)
-0.273
Length
495 amino acids
Sequence
(BLAST)
(BLAST)
001: MVLAELGGRI TRAIQQMSNV TIIDEKALNE CLNEITRALL QSDVSFPLVK EMQSNIKKIV NLEDLAAGHN KRRIIEQAIF SELCKMLDPG KPAFAPKKAK
101: ASVVMFVGLQ GAGKTTTCTK YAYYHQKKGY KPALVCADTF RAGAFDQLKQ NATKAKIPFY GSYTESDPVK IAVEGVDTFK KENCDLIIVD TSGRHKQEAS
201: LFEEMRQVAE ATKPDLVIFV MDSSIGQAAF DQAQAFKQSV AVGAVIITKM DGHAKGGGAL SAVAATKSPV IFIGTGEHMD EFEVFDVKPF VSRLLGMGDW
301: SGFVDKLQEV VPKDQQPELL EKLSQGNFTL RIMYDQFQNI LNMGPLKEVF SMLPGISAEM MPKGHEKESQ AKIKRYMTMM DSMTNDELDS SNPKVFNESR
401: MMRIARGSGR QVREVMEMLE EYKRLAKIWS KMKGLKIPKN GDMSALSRNM NAQHMSKVLP PQMLKQIGGM GGLQSLMKQM GSGKDMMGMF GGGDK
101: ASVVMFVGLQ GAGKTTTCTK YAYYHQKKGY KPALVCADTF RAGAFDQLKQ NATKAKIPFY GSYTESDPVK IAVEGVDTFK KENCDLIIVD TSGRHKQEAS
201: LFEEMRQVAE ATKPDLVIFV MDSSIGQAAF DQAQAFKQSV AVGAVIITKM DGHAKGGGAL SAVAATKSPV IFIGTGEHMD EFEVFDVKPF VSRLLGMGDW
301: SGFVDKLQEV VPKDQQPELL EKLSQGNFTL RIMYDQFQNI LNMGPLKEVF SMLPGISAEM MPKGHEKESQ AKIKRYMTMM DSMTNDELDS SNPKVFNESR
401: MMRIARGSGR QVREVMEMLE EYKRLAKIWS KMKGLKIPKN GDMSALSRNM NAQHMSKVLP PQMLKQIGGM GGLQSLMKQM GSGKDMMGMF GGGDK
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.