CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
BaCelLo:	cytosol
MultiLoc:	cytosol
Predotar:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG37974	Sorghum	cytosol	97.98	97.98
EES19782	Sorghum	cytosol	73.09	67.63
Os05t0509500-01	Rice	plasma membrane	67.26	62.11
EES01544	Sorghum	cytosol	68.83	61.9
KXG34125	Sorghum	cytosol	68.61	61.57
TraesCS1A01G327200.1	Wheat	cytosol	67.71	60.76
TraesCS1B01G340600.1	Wheat	golgi, plastid	67.49	60.56
HORVU2Hr1G020570.1	Barley	plasma membrane	67.26	60.36
TraesCS1D01G329300.1	Wheat	cytosol	66.82	59.96
KRH47429	Soybean	cytosol, endoplasmic reticulum, nucleus	66.37	59.8
KRH44479	Soybean	cytosol	66.37	59.8
VIT_09s0002g07290.t01	Wine grape	cytosol	66.14	59.6
CDY36546	Canola	cytosol	63.68	59.29
TraesCS1A01G327300.1	Wheat	cytosol	65.47	59.23
HORVU1Hr1G077990.4	Barley	cytosol	66.82	59.13
Bra026145.1-P	Field mustard	cytosol	63.23	58.87
CDY39632	Canola	cytosol	63.23	58.75
KRH09713	Soybean	cytosol	65.7	58.72
CDY16472	Canola	cytosol	51.57	58.67
AT1G15310.1	Thale cress	cytosol	63.0	58.66
Solyc12g042740.1.1	Tomato	cytosol	65.47	58.52
TraesCS1B01G340700.1	Wheat	cytosol	64.8	58.5
KRH23593	Soybean	cytosol	65.25	58.2
PGSC0003DMT400001674	Potato	cytosol	64.8	58.15
PGSC0003DMT400073698	Potato	cytosol	65.02	58.12
Bra014161.1-P	Field mustard	cytosol	64.35	57.86
CDX77276	Canola	cytosol	64.35	57.86
AT1G48900.1	Thale cress	cytosol	64.13	57.78
Bra018760.1-P	Field mustard	cytosol	64.13	57.78
CDY40616	Canola	cytosol	63.9	57.58
CDX93702	Canola	cytosol	63.9	57.58
CDY10656	Canola	cytosol	24.89	56.63
AT5G49500.1	Thale cress	cytosol	60.54	54.33
Solyc03g116810.2.1	Tomato	nucleus	65.47	49.49
GSMUA_Achr9P25680_001	Banana	cytosol	43.72	44.72
CDY46694	Canola	cytosol	28.25	40.65
CDY17067	Canola	cytosol, nucleus	29.37	40.56
AT5G66970.1	Thale cress	cytosol	15.47	39.43
Bra014039.1-P	Field mustard	cytosol	34.75	37.71
EES04254	Sorghum	plastid	19.96	24.32
EES16662	Sorghum	plastid	28.48	22.72
KXG27759	Sorghum	plastid	26.68	21.6
EES17686	Sorghum	endoplasmic reticulum, extracellular	18.16	13.78
EER93028	Sorghum	cytosol, endoplasmic reticulum, mitochondrion, plastid	19.06	13.62

Protein Annotations

Gene3D:1.10.260.30	Gene3D:1.20.120.140	MapMan:23.3.1.1.5	Gene3D:3.40.50.300	UniProt:A0A1B6QJ76	GO:GO:0000166
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488
GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006614
GO:GO:0006810	GO:GO:0008150	GO:GO:0008312	GO:GO:0016787	GO:GO:0048500	InterPro:IPR036891
EnsemblPlants:KXG37972	ProteinID:KXG37972	ProteinID:KXG37972.1	InterPro:P-loop_NTPase	PFAM:PF00448	PFAM:PF02881
PFAM:PF02978	ScanProsite:PS00300	PANTHER:PTHR11564	PANTHER:PTHR11564:SF5	SMART:SM00962	SMART:SM00963
EnsemblPlantsGene:SORBI_3001G160600	InterPro:SRP/SRP_N	InterPro:SRP54	InterPro:SRP54_GTPase_dom	SUPFAM:SSF47364	SUPFAM:SSF47446
SUPFAM:SSF52540	InterPro:Signal_recog_part_SRP54_M_sf	InterPro:Signal_recog_particl_SRP54_hlx	InterPro:Signal_recog_particle_SRP54_M	UniParc:UPI00081AB7C0	SEG:seg

Description

hypothetical protein

Coordinates

chr1:-:13195257..13196687

Molecular Weight (calculated)

48829.4 Da

IEP (calculated)

10.331

GRAVY (calculated)

-0.224

Length

446 amino acids

Sequence
(BLAST)

001: MVLSQLSGSL KGALSRMCNA TLVDQKVLDD CLNEISRALL QADVRFETVR RVQATIKSTV NLQALADGTN KRRVIHRAVV AELRRTLDPG KPSFAPTKGR
101: KPASVVMFVG LQGSGKTTTC VKYADYHRRH KGLSPALVCA DTFRAGAFDQ LKQNATKAGI PFYGSHTESD PVKVAVEGVD RFRDEDACDL IVVDTSGRHR
201: QEAALLEEMR QVADATRPDL VVFVMDASIG QAAFQQAQAF RQSTPVGAVI VTKMDGHAKG GGALSAVAAT KSPVIFIGTG EHIPDLEAFD AKSFILEELT
301: KENFTLRALR KLFRAMLSMG PLGQLVSMIP GLISDRFSEK EGHAKMKRYM TMMDSMTDAE LDGTSTKLMN QSRIKRVARG SGRPVRDVVD MLEEHKRMAK
401: MMSKLPNVKR PNDINTLVNA IPQPLLNQFG GKFGLQSLIR QMGAQN

Best Arabidopsis Sequence Match ( AT1G48900.1 )
(BLAST)

001: MVLAELGGRI TRAIQQMSNV TIIDEKALNE CLNEITRALL QSDVSFPLVK EMQSNIKKIV NLEDLAAGHN KRRIIEQAIF SELCKMLDPG KPAFAPKKAK
101: ASVVMFVGLQ GAGKTTTCTK YAYYHQKKGY KPALVCADTF RAGAFDQLKQ NATKAKIPFY GSYTESDPVK IAVEGVDTFK KENCDLIIVD TSGRHKQEAS
201: LFEEMRQVAE ATKPDLVIFV MDSSIGQAAF DQAQAFKQSV AVGAVIITKM DGHAKGGGAL SAVAATKSPV IFIGTGEHMD EFEVFDVKPF VSRLLGMGDW
301: SGFVDKLQEV VPKDQQPELL EKLSQGNFTL RIMYDQFQNI LNMGPLKEVF SMLPGISAEM MPKGHEKESQ AKIKRYMTMM DSMTNDELDS SNPKVFNESR
401: MMRIARGSGR QVREVMEMLE EYKRLAKIWS KMKGLKIPKN GDMSALSRNM NAQHMSKVLP PQMLKQIGGM GGLQSLMKQM GSGKDMMGMF GGGDK

Arabidopsis Description

SRP-54CSignal recognition particle 54 kDa protein 3 [Source:UniProtKB/Swiss-Prot;Acc:P49967]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.