Factsheet for Bra026145.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
BaCelLo:	cytosol
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY36546	Canola	cytosol	96.45	96.45
CDY39632	Canola	cytosol	93.74	93.54
AT1G15310.1	Thale cress	cytosol	81.21	81.21
Bra014161.1-P	Field mustard	cytosol	83.72	80.85
Bra018760.1-P	Field mustard	cytosol	82.25	79.6
HORVU5Hr1G019120.2	Barley	cytosol	30.9	77.08
HORVU6Hr1G029680.1	Barley	cytosol	30.9	77.08
KRH44479	Soybean	cytosol	79.33	76.77
KRH47429	Soybean	cytosol, endoplasmic reticulum, nucleus	79.33	76.77
VIT_09s0002g07290.t01	Wine grape	cytosol	79.12	76.57
PGSC0003DMT400001674	Potato	cytosol	79.33	76.46
HORVU2Hr1G125480.2	Barley	cytosol	31.32	76.14
KRH09713	Soybean	cytosol	79.12	75.95
Solyc12g042740.1.1	Tomato	cytosol	79.12	75.95
KRH23593	Soybean	cytosol	79.12	75.8
GSMUA_Achr8P03120_001	Banana	cytosol	77.87	75.05
HORVU3Hr1G075590.1	Barley	cytosol	30.06	75.0
PGSC0003DMT400073698	Potato	cytosol	78.08	74.95
AT5G49500.1	Thale cress	cytosol	77.66	74.85
Zm00001d043303_P001	Maize	cytosol	75.78	73.48
HORVU7Hr1G036330.1	Barley	cytosol	36.95	73.44
EES01544	Sorghum	cytosol	75.99	73.39
Os01t0772800-01	Rice	plasma membrane	75.57	72.98
Zm00001d012652_P003	Maize	extracellular	75.99	72.8
TraesCS1B01G340600.1	Wheat	golgi, plastid	74.11	71.43
HORVU2Hr1G020570.1	Barley	plasma membrane	74.11	71.43
TraesCS1D01G329300.1	Wheat	cytosol	73.28	70.62
HORVU1Hr1G077990.4	Barley	cytosol	73.49	69.84
HORVU2Hr1G097520.1	Barley	cytosol	31.94	68.92
Os05t0509500-01	Rice	plasma membrane	68.27	67.7
TraesCS3D01G308700.1	Wheat	cytosol, mitochondrion	67.43	66.74
TraesCS1B01G340700.1	Wheat	cytosol	68.06	65.99
EES19782	Sorghum	cytosol	66.39	65.98
TraesCS3B01G342900.1	Wheat	cytosol	66.6	65.91
Solyc03g116810.2.1	Tomato	nucleus	79.75	64.75
Zm00001d038661_P001	Maize	cytosol	64.93	64.52
KXG37974	Sorghum	cytosol	59.08	63.45
KXG37972	Sorghum	cytosol	58.87	63.23
KXG34125	Sorghum	cytosol	54.91	52.92
GSMUA_Achr9P25680_001	Banana	cytosol	47.81	52.52
Bra014039.1-P	Field mustard	cytosol	33.82	39.42
Bra039315.1-P	Field mustard	plastid	15.45	23.49
Bra004937.1-P	Field mustard	plastid	17.75	23.1
Bra009499.1-P	Field mustard	plastid	25.89	21.91
Bra028809.1-P	Field mustard	plastid	25.47	21.63
Bra024060.1-P	Field mustard	cytosol, endoplasmic reticulum	16.91	13.19
Bra011203.1-P	Field mustard	endoplasmic reticulum	16.91	13.02
Bra014811.1-P	Field mustard	cytosol, endoplasmic reticulum	10.23	9.3

Protein Annotations

Gene3D:1.10.260.30	Gene3D:1.20.120.140	MapMan:23.3.1.1.5	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	EnsemblPlantsGene:Bra026145
EnsemblPlants:Bra026145.1	EnsemblPlants:Bra026145.1-P	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005786	GO:GO:0006614	GO:GO:0006810	GO:GO:0008150
GO:GO:0008312	GO:GO:0016787	GO:GO:0030529	GO:GO:0045047	GO:GO:0048500	InterPro:IPR036891
UniProt:M4EBI6	HAMAP:MF_00306	InterPro:P-loop_NTPase	PFAM:PF00448	PFAM:PF02881	PFAM:PF02978
ScanProsite:PS00300	PANTHER:PTHR11564	PANTHER:PTHR11564:SF5	SMART:SM00382	SMART:SM00962	SMART:SM00963
InterPro:SRP/SRP_N	InterPro:SRP54	InterPro:SRP54_GTPase_dom	InterPro:SRP54_euk	SUPFAM:SSF47364	SUPFAM:SSF47446
SUPFAM:SSF52540	InterPro:Signal_recog_part_SRP54_M_sf	InterPro:Signal_recog_particl_SRP54_hlx	InterPro:Signal_recog_particle_SRP54_M	TIGRFAMs:TIGR01425	UniParc:UPI000253F039
SEG:seg	:	:	:	:	:

Description

AT1G48900 (E=3e-226) | signal recognition particle 54 kDa protein 3 / SRP54 (SRP-54C)

Coordinates

chrA06:-:5887924..5890020

Molecular Weight (calculated)

53219.8 Da

IEP (calculated)

9.539

GRAVY (calculated)

-0.281

Length

479 amino acids

Sequence
(BLAST)

001: MVLAELGGRI THAIHQMRNA TIIDEKALNE CLNEITRALL QSDVSFSLVK EMQTNIKKIV NLQDLSAGHN KRRIIEQAIF SELCKMLDPG KPAFSPKKTK
101: PSIVMFVGLQ GAGKTTTCTK YAYYHQKKGY KPALVCADTF RAGAFDQLKQ NATKAKIPFY GSYTESDPVK IAVEGVDRFK KENCDLIIVD TSGRHKQEAS
201: LFEEMRQVAE ATKPDLVIFV MDSSIGQAAF DQAQAFRQSV AVGAVIITKM DGHAKGGGAL SAVAATKSPV IFIGTGEHMD QFEVFDVKPF VNRLLGMGDL
301: SGLVDKLQEV VPKDQQAEFV EKISKGNFSM RMMYEQYQSV LSSGPLNQLY SMLPGVSAQM MPEGESEAKI KRYMTVMDSM TNEELDSSNL KAFNESRIMR
401: IARGSGRIVR EVMEVLEEYR KMAKTFSNWK GFKMPKNGDM SSNKSAQQLM SKVMSPQMLQ RFGGMSGLQS LMRQMGTNI

Best Arabidopsis Sequence Match ( AT1G48900.1 )
(BLAST)

001: MVLAELGGRI TRAIQQMSNV TIIDEKALNE CLNEITRALL QSDVSFPLVK EMQSNIKKIV NLEDLAAGHN KRRIIEQAIF SELCKMLDPG KPAFAPKKAK
101: ASVVMFVGLQ GAGKTTTCTK YAYYHQKKGY KPALVCADTF RAGAFDQLKQ NATKAKIPFY GSYTESDPVK IAVEGVDTFK KENCDLIIVD TSGRHKQEAS
201: LFEEMRQVAE ATKPDLVIFV MDSSIGQAAF DQAQAFKQSV AVGAVIITKM DGHAKGGGAL SAVAATKSPV IFIGTGEHMD EFEVFDVKPF VSRLLGMGDW
301: SGFVDKLQEV VPKDQQPELL EKLSQGNFTL RIMYDQFQNI LNMGPLKEVF SMLPGISAEM MPKGHEKESQ AKIKRYMTMM DSMTNDELDS SNPKVFNESR
401: MMRIARGSGR QVREVMEMLE EYKRLAKIWS KMKGLKIPKN GDMSALSRNM NAQHMSKVLP PQMLKQIGGM GGLQSLMKQM GSGKDMMGMF GGGDK

Arabidopsis Description

SRP-54CSignal recognition particle 54 kDa protein 3 [Source:UniProtKB/Swiss-Prot;Acc:P49967]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.