Factsheet for Os05t0509500-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

cytosol 5
nucleus 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

plasma membrane: 27800704

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU2Hr1G020570.1	Barley	plasma membrane	81.16	78.87
TraesCS1B01G340600.1	Wheat	golgi, plastid	80.95	78.67
TraesCS1A01G327200.1	Wheat	cytosol	80.95	78.67
Os01t0772800-01	Rice	plasma membrane	79.5	77.42
TraesCS1D01G329300.1	Wheat	cytosol	79.5	77.26
HORVU1Hr1G077990.4	Barley	cytosol	80.54	77.18
EES19782	Sorghum	cytosol	74.74	74.9
KRH47429	Soybean	cytosol, endoplasmic reticulum, nucleus	75.98	74.14
KRH44479	Soybean	cytosol	75.78	73.94
KRH09713	Soybean	cytosol	76.19	73.75
KRH23593	Soybean	cytosol	75.78	73.2
VIT_09s0002g07290.t01	Wine grape	cytosol	74.95	73.13
Solyc12g042740.1.1	Tomato	cytosol	75.36	72.95
Zm00001d038661_P001	Maize	cytosol	72.46	72.61
TraesCS1A01G327300.1	Wheat	cytosol	73.71	72.21
TraesCS1B01G340700.1	Wheat	cytosol	73.71	72.06
PGSC0003DMT400001674	Potato	cytosol	74.12	72.03
PGSC0003DMT400073698	Potato	cytosol	74.33	71.94
CDY16472	Canola	cytosol	57.97	71.43
AT1G48900.1	Thale cress	cytosol	72.05	70.3
Bra014161.1-P	Field mustard	cytosol	71.64	69.76
CDX77276	Canola	cytosol	71.64	69.76
CDY40616	Canola	cytosol	71.22	69.49
CDX93702	Canola	cytosol	71.22	69.49
Bra018760.1-P	Field mustard	cytosol	71.22	69.49
AT1G15310.1	Thale cress	cytosol	68.74	69.31
CDY36546	Canola	cytosol	68.32	68.89
Bra026145.1-P	Field mustard	cytosol	67.7	68.27
CDY39632	Canola	cytosol	67.49	67.92
KXG37974	Sorghum	cytosol	62.11	67.26
KXG37972	Sorghum	cytosol	62.11	67.26
AT5G49500.1	Thale cress	cytosol	66.25	64.39
CDY10656	Canola	cytosol	25.67	63.27
Solyc03g116810.2.1	Tomato	nucleus	74.53	61.02
KXG34125	Sorghum	cytosol	59.63	57.95
GSMUA_Achr9P25680_001	Banana	cytosol	47.83	52.98
CDY46694	Canola	cytosol	27.33	42.58
CDY17067	Canola	cytosol, nucleus	28.36	42.41
Bra014039.1-P	Field mustard	cytosol	33.54	39.42
AT5G66970.1	Thale cress	cytosol	13.87	38.29
Os01t0958100-01	Rice	plastid	18.43	24.52
Os11t0153700-01	Rice	plastid	26.5	22.98
Os11t0153600-01	Rice	cytosol	10.14	22.37
Os11t0153800-01	Rice	nucleus	0.0	0.0

Protein Annotations

Gene3D:1.10.260.30	Gene3D:1.20.120.140	MapMan:23.3.1.1.5	Gene3D:3.40.50.300	EntrezGene:4339274	InterPro:AAA+_ATPase
ProteinID:AAT44271.1	EMBL:AB115419	EMBL:AK068958	ProteinID:BAF17917.1	ProteinID:BAS94823.1	ProteinID:EEE64312.1
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0003924
GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005786	GO:GO:0006614	GO:GO:0006810	GO:GO:0008150	GO:GO:0008312	GO:GO:0016787
GO:GO:0045047	GO:GO:0048500	InterPro:IPR036891	HAMAP:MF_00306	EnsemblPlantsGene:Os05g0509500	EnsemblPlants:Os05t0509500-01
InterPro:P-loop_NTPase	PFAM:PF00448	PFAM:PF02881	PFAM:PF02978	ScanProsite:PS00300	PANTHER:PTHR11564
PANTHER:PTHR11564:SF5	UniProt:Q7XB57	SMART:SM00382	SMART:SM00962	SMART:SM00963	InterPro:SRP/SRP_N
InterPro:SRP54	InterPro:SRP54_GTPase_dom	InterPro:SRP54_euk	SUPFAM:SSF47364	SUPFAM:SSF47446	SUPFAM:SSF52540
InterPro:Signal_recog_part_SRP54_M_sf	InterPro:Signal_recog_particl_SRP54_hlx	InterPro:Signal_recog_particle_SRP54_M	TIGRFAMs:TIGR01425	UniParc:UPI00001B3E1C	RefSeq:XP_015637823.1
SEG:seg	:	:	:	:	:

Description

Similar to Signal recognition particle 54 kDa protein 2 (SRP54). (Os05t0509500-01)

Coordinates

chr5:-:25229702..25233200

Molecular Weight (calculated)

53193.1 Da

IEP (calculated)

10.104

GRAVY (calculated)

-0.230

Length

483 amino acids

Sequence
(BLAST)

001: MVLAQLGGSI SRALAQMSNA TVIDDKAFAD CLHEIARALL QSDVQIRMVS DMRANIRRAV NLDALPAGTN KRRIIQQAVF AELCNMLDPG KPSFTPTKGK
101: PSVVMFVGLQ GSGKTTTCTK YAHYHQLKGF KPSLVCADTF RAGAFDQLKQ NATKAKIPYY GSYMESDPVK IAVEGVERFR KEKSDLIIVD TSGRHKQEAA
201: LFEEMRQVAE ATKPDLVIFV MDGSIGQAAF DQAQAFKQSA SVGAVIVTKL DGHAKGGGAL SAVAATKSPV VFIGTGEHMQ DFEVFDVKPF VSRLLGMGDL
301: SGLVNKIKDA MPADQQPELM QRLIEGTFTL RVFYELFQNL LNMGPIGQVL SMIPGFRSEL MPKGHDKESQ AKIKRYMTIM DSMTNAELDS TNPKLMSESR
401: IKRVARGSGR TMKDVTDMLE EYKRIAKVCS KLKKKLPKNM DRNVMNNKDT LNTINNLIPK QLLNQIGGVN PLQSVMKQMG LKT

Best Arabidopsis Sequence Match ( AT1G48900.1 )
(BLAST)

001: MVLAELGGRI TRAIQQMSNV TIIDEKALNE CLNEITRALL QSDVSFPLVK EMQSNIKKIV NLEDLAAGHN KRRIIEQAIF SELCKMLDPG KPAFAPKKAK
101: ASVVMFVGLQ GAGKTTTCTK YAYYHQKKGY KPALVCADTF RAGAFDQLKQ NATKAKIPFY GSYTESDPVK IAVEGVDTFK KENCDLIIVD TSGRHKQEAS
201: LFEEMRQVAE ATKPDLVIFV MDSSIGQAAF DQAQAFKQSV AVGAVIITKM DGHAKGGGAL SAVAATKSPV IFIGTGEHMD EFEVFDVKPF VSRLLGMGDW
301: SGFVDKLQEV VPKDQQPELL EKLSQGNFTL RIMYDQFQNI LNMGPLKEVF SMLPGISAEM MPKGHEKESQ AKIKRYMTMM DSMTNDELDS SNPKVFNESR
401: MMRIARGSGR QVREVMEMLE EYKRLAKIWS KMKGLKIPKN GDMSALSRNM NAQHMSKVLP PQMLKQIGGM GGLQSLMKQM GSGKDMMGMF GGGDK

Arabidopsis Description

SRP-54CSignal recognition particle 54 kDa protein 3 [Source:UniProtKB/Swiss-Prot;Acc:P49967]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.