Factsheet for Os01t0958100-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
extracellular 1
cytosol 3

Predictors

GFP

MS/MS

Papers

plastid: 17189339
plastid: 21433289

msms PMID: 21433289 doi

S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky

Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.

msms PMID: 17189339 doi

T Kleffmann, A von Zychlinski, D Russenberger, M Hirsch-Hoffmann, P Gehrig, W Gruissem, S Baginsky

Institute of Plant Sciences, Eidgenössische Technische Hochschule Zurich, 8092 Zurich, Switzerland.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0151200-01
Os02t0656300-01
Os02t0708400-01
Os03t0131900-01
Os06t0679100-00
Os11t0153600-01
Os11t0153700-01
Os11t0153800-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G45770.1	Os01t0151200-01	AT2G28800.1	14517205
AT2G45770.1	Os03t0131900-01	AT2G47450.1	14517205
AT2G45770.1	Os02t0708400-01	AT3G27960.1	21798944
AT2G45770.1	Os02t0656300-01	AT3G48150.1	21798944
AT2G45770.1	Os06t0679100-00	AT3G48150.1	21798944
AT2G45770.1	Os11t0153600-01	AT5G03940.1	14517205
AT2G45770.1	Os11t0153700-01	AT5G03940.1	14517205
AT2G45770.1	Os11t0153800-01	AT5G03940.1	14517205

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES04254	Sorghum	plastid	92.56	91.8
TraesCS3A01G498300.1	Wheat	plastid	87.05	88.02
TraesCS3B01G561300.1	Wheat	plastid	86.5	87.96
TraesCSU01G058200.1	Wheat	plastid	86.78	87.5
HORVU3Hr1G110160.4	Barley	mitochondrion	86.78	78.95
Zm00001d042044_P001	Maize	plastid	92.56	78.32
KRH65131	Soybean	plastid	76.31	74.46
KRH48224	Soybean	plastid	75.48	73.66
CDY18901	Canola	plastid	72.45	72.85
GSMUA_Achr11P...	Banana	plastid	76.31	72.51
AT2G45770.1	Thale cress	plastid	73.0	72.4
CDX74765	Canola	plastid	73.28	72.28
Bra004937.1-P	Field mustard	plastid	73.0	72.01
CDY37064	Canola	plastid	72.45	71.47
VIT_15s0048g02080.t01	Wine grape	plastid	72.18	71.39
CDY27360	Canola	plastid	71.63	70.84
Bra039315.1-P	Field mustard	plastid	61.16	70.48
PGSC0003DMT400071384	Potato	plastid	71.07	70.11
Solyc01g091580.2.1	Tomato	plastid	71.07	70.11
Os05t0509500-01	Rice	plasma membrane	24.52	18.43
Os01t0772800-01	Rice	plasma membrane	24.52	17.94
Os11t0153700-01	Rice	plastid	24.52	15.98
Os11t0153600-01	Rice	cytosol	3.31	5.48
Os11t0153800-01	Rice	nucleus	0.0	0.0

Protein Annotations

Gene3D:1.20.120.140	MapMan:23.1.7.4	Gene3D:3.40.50.300	EntrezGene:4325387	InterPro:AAA+_ATPase	EMBL:AK058574
ProteinID:BAD88155.1	ProteinID:BAS76303.1	ProteinID:EEE56037.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488
GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006614	GO:GO:0006810
GO:GO:0008150	HAMAP:MF_00920	EnsemblPlantsGene:Os01g0958100	EnsemblPlants:Os01t0958100-01	InterPro:P-loop_NTPase	PFAM:PF00448
PFAM:PF02881	ScanProsite:PS00300	PANTHER:PTHR43134	PANTHER:PTHR43134:SF2	UniProt:Q5JK67	SMART:SM00382
SMART:SM00962	SMART:SM00963	InterPro:SRP/SRP_N	InterPro:SRP54_GTPase_dom	InterPro:SR_rcpt_FtsY	SUPFAM:SSF47364
SUPFAM:SSF52540	InterPro:Signal_recog_particl_SRP54_hlx	TIGRFAMs:TIGR00064	UniParc:UPI00000A6E21	RefSeq:XP_015629030.1	SEG:seg

Description

Similar to chloroplast SRP receptor cpFtsY precursor. (Os01t0958100-01);Similar to chloroplast srp54 receptor1. (Os01t0958100-02)

Coordinates

chr1:-:42234585..42237456

Molecular Weight (calculated)

39256.6 Da

IEP (calculated)

8.117

GRAVY (calculated)

-0.036

Length

363 amino acids

Sequence
(BLAST)

001: MAAHSHVIPF LSPAATSARC SPYGHRRRGR AGLLRCAAAA GQAGFFTRLG RLIQEKAKSD VEKLFSGFSK TRESLSVVDE LLTYWNLADT DRVLDELEEA
101: LLVSDFGPKI SFRIVDTLRE EIRDGKLKSG AEIKEALKRC ILELLTSKGG NPELQLGFRK PAVIMIVGVN GGGKTTSLGK LAYRFKNEGV KVLMAAGDTF
201: RAAARDQLEV WAERTGSEIV IDNDKKAKPA SVLSQAVKRG KREGFDLVLC DTSGRLHTNY GLMEELVSCK KVIAKALPGA PNEILLVLDG TTGLNMLQQA
301: REFNDVVGVT GFVLTKLDGT ARGGCVVSVV DELGIPVKFI GVGEGMEDLQ PFDAEAFVEA IFP

Best Arabidopsis Sequence Match ( AT2G45770.1 )
(BLAST)

001: MATSSAHLSF LAGRISPFSS ERIGLFPLRG EFRPRMTRFR CSAGPSGFFT RLGRLIKEKA KSDVEKVFSG FSKTRENLAV IDELLLFWNL AETDRVLDEL
101: EEALLVSDFG PKITVRIVER LREDIMSGKL KSGSEIKDAL KESVLEMLAK KNSKTELQLG FRKPAVIMIV GVNGGGKTTS LGKLAHRLKN EGTKVLMAAG
201: DTFRAAASDQ LEIWAERTGC EIVVAEGDKA KAATVLSKAV KRGKEEGYDV VLCDTSGRLH TNYSLMEELI ACKKAVGKIV SGAPNEILLV LDGNTGLNML
301: PQAREFNEVV GITGLILTKL DGSARGGCVV SVVEELGIPV KFIGVGEAVE DLQPFDPEAF VNAIFS

Arabidopsis Description

CPFTSYCell division protein FtsY homolog, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O80842]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.