Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 4
- mitochondrion 4
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| plasma membrane:
27800704
|
msms PMID:
27800704
doi
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU3Hr1G013690.6 | Barley | mitochondrion | 74.51 | 82.01 |
| TraesCS3A01G075700.1 | Wheat | plastid | 79.08 | 80.85 |
| TraesCS3D01G075800.1 | Wheat | plastid | 79.08 | 80.67 |
| Zm00001d039852_P001 | Maize | plastid | 79.96 | 80.66 |
| TraesCS3B01G089800.1 | Wheat | plastid | 78.65 | 80.4 |
| KXG31875 | Sorghum | plastid | 78.65 | 79.34 |
| Zm00001d008625_P001 | Maize | mitochondrion | 79.08 | 78.06 |
| Solyc11g066110.1.1 | Tomato | plastid | 69.5 | 71.36 |
| PGSC0003DMT400001063 | Potato | plastid | 69.5 | 71.21 |
| VIT_06s0004g04460.t01 | Wine grape | plastid | 69.93 | 70.55 |
| KRH24811 | Soybean | plastid | 68.19 | 69.56 |
| KRH29812 | Soybean | plastid | 67.97 | 69.33 |
| CDY31733 | Canola | plastid | 66.23 | 68.47 |
| Bra035669.1-P | Field mustard | plastid | 66.67 | 68.46 |
| CDX77209 | Canola | plastid | 65.58 | 67.79 |
| GSMUA_Achr9P03990_001 | Banana | mitochondrion, plastid | 63.62 | 65.77 |
| AT2G28800.1 | Thale cress | plastid | 65.58 | 65.15 |
| Os03t0844700-01 | Rice | golgi, plastid | 32.24 | 45.26 |
| GSMUA_Achr5P28630_001 | Banana | cytosol, nucleus, plasma membrane | 64.71 | 42.43 |
Protein Annotations
| MapMan:23.1.7.5 | EntrezGene:4324524 | ProteinID:BAD61111.1 | ProteinID:BAF03952.1 | ProteinID:BAS70424.1 | GO:GO:0003674 |
| GO:GO:0005215 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0015031 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016043 | GO:GO:0032977 | GO:GO:0051205 | InterPro:Membr_insert_YidC/Oxa1_C |
| EnsemblPlantsGene:Os01g0151200 | EnsemblPlants:Os01t0151200-01 | PFAM:PF02096 | PANTHER:PTHR12428 | PANTHER:PTHR12428:SF19 | UniProt:Q5ZEK1 |
| TIGRFAMs:TIGR03592 | TMHMM:TMhelix | UniParc:UPI0000450468 | RefSeq:XP_015640651.1 | InterPro:YidC/ALB3/OXA1/COX18 | SEG:seg |
Description
Similar to Inner membrane protein ALBINO3, chloroplast precursor. Splice isoform 2. (Os01t0151200-01);Similar to inner membrane protein ALBINO3. (Os01t0151200-02);Similar to inner membrane protein ALBINO3. (Os01t0151200-03)
Coordinates
chr1:+:2770142..2774161
Molecular Weight (calculated)
48841.8 Da
IEP (calculated)
9.928
GRAVY (calculated)
-0.096
Length
459 amino acids
Sequence
(BLAST)
(BLAST)
001: MAKALLSSSL LPSLQPRAAA ARLPMLTLPS LRRHGGRRAS ACRVRASLHG LDSIAGLDLH AALERAEAAL YTLADAAVVA ADAAAGGGGG GGGGGGEAAA
101: SVAQKNGGWF GFISEALEVV LKVLKDGLSA VHVPYSYGFA IILLTVIVKA ATLPLTKQQV ESTLAMQNLQ PQIKAIQQRY AGNQERIQLE TARLYKQAGV
201: NPLAGCFPTL ATIPVWIGLY QALSNVANEG LLTEGFFWIP SLGGPTTIAA RQSGAGISWL LPFVDGHPPL GWHDTICYLV LPVLLVASQF VSMEIMKPPQ
301: TDDPSQKNTL LVLKFLPFMI GWFSLSVPSG LSIYWFTNNI LSTAQQVWLR KLGGAKPVVN QGGSGIITAG RAKRTSAQPA QPGERFKQLK EEESKRKGNK
401: ALAAGDSDLS ASTSEDEESD DETTEEGGPE ERYNSSSNKK LPNYSGKKGK RSKRKRMVQ
101: SVAQKNGGWF GFISEALEVV LKVLKDGLSA VHVPYSYGFA IILLTVIVKA ATLPLTKQQV ESTLAMQNLQ PQIKAIQQRY AGNQERIQLE TARLYKQAGV
201: NPLAGCFPTL ATIPVWIGLY QALSNVANEG LLTEGFFWIP SLGGPTTIAA RQSGAGISWL LPFVDGHPPL GWHDTICYLV LPVLLVASQF VSMEIMKPPQ
301: TDDPSQKNTL LVLKFLPFMI GWFSLSVPSG LSIYWFTNNI LSTAQQVWLR KLGGAKPVVN QGGSGIITAG RAKRTSAQPA QPGERFKQLK EEESKRKGNK
401: ALAAGDSDLS ASTSEDEESD DETTEEGGPE ERYNSSSNKK LPNYSGKKGK RSKRKRMVQ
001: MARVLVSSPS SFFGSPLIKP SSSLRHSGVG GGGTAQFLPY RSNNNKLFTT STTVRFSLNE IPPFHGLDSS VDIGAIFTRA ESLLYTIADA AVVGADSVVT
101: TDSSAVQKSG GWFGFISDAM ELVLKILKDG LSAVHVPYAY GFAIILLTII VKAATYPLTK QQVESTLAMQ NLQPKIKAIQ QRYAGNQERI QLETSRLYKQ
201: AGVNPLAGCL PTLATIPVWI GLYQALSNVA NEGLFTEGFF WIPSLGGPTS IAARQSGSGI SWLFPFVDGH PPLGWYDTVA YLVLPVLLIA SQYVSMEIMK
301: PPQTDDPAQK NTLLVFKFLP LMIGYFALSV PSGLSIYWLT NNVLSTAQQV YLRKLGGAKP NMDENASKII SAGRAKRSIA QPDDAGERFR QLKEQEKRSK
401: KNKAVAKDTV ELVEESQSES EEGSDDEEEE AREGALASST TSKPLPEVGQ RRSKRSKRKR TV
101: TDSSAVQKSG GWFGFISDAM ELVLKILKDG LSAVHVPYAY GFAIILLTII VKAATYPLTK QQVESTLAMQ NLQPKIKAIQ QRYAGNQERI QLETSRLYKQ
201: AGVNPLAGCL PTLATIPVWI GLYQALSNVA NEGLFTEGFF WIPSLGGPTS IAARQSGSGI SWLFPFVDGH PPLGWYDTVA YLVLPVLLIA SQYVSMEIMK
301: PPQTDDPAQK NTLLVFKFLP LMIGYFALSV PSGLSIYWLT NNVLSTAQQV YLRKLGGAKP NMDENASKII SAGRAKRSIA QPDDAGERFR QLKEQEKRSK
401: KNKAVAKDTV ELVEESQSES EEGSDDEEEE AREGALASST TSKPLPEVGQ RRSKRSKRKR TV
Arabidopsis Description
ALB3ALB3 [Source:UniProtKB/TrEMBL;Acc:A0A178VUV3]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.