Factsheet for Os08t0526300-02

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CAA33977
Os02t0103800-01
Os06t0107700-01
Os08t0104600-02
Os08t0560900-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G22890.1	Os02t0103800-01	AT1G20020.1	18243102
AT4G22890.1	Os06t0107700-01	AT1G20020.1	18243102
AT4G22890.1	Os08t0104600-02	AT1G60950.1	18243102
AT4G22890.1	Os08t0560900-01	AT4G02770.1	18243102
AT4G22890.1	Os02t0103800-01	AT5G66190.1	18243102
AT4G22890.1	Os06t0107700-01	AT5G66190.1	18243102
AT4G22890.1	CAA33977	ATCG00720.1	18243102

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P28830_001	Banana	cytosol, peroxisome, plasma membrane	67.17	78.37
KXG34948	Sorghum	plastid	74.77	74.1
GSMUA_Achr2P12240_001	Banana	plastid	71.12	74.05
Zm00001d019454_P001	Maize	plastid	71.73	70.45
KRH26378	Soybean	plasma membrane	31.0	68.92
Os03t0857400-01	Rice	plasma membrane	66.87	67.9
PGSC0003DMT400032525	Potato	plastid	63.53	65.52
Bra013653.1-P	Field mustard	plastid	63.22	65.2
CDY41285	Canola	plastid	63.22	65.2
CDY10819	Canola	plastid	62.92	64.89
KRH57278	Soybean	plastid	63.22	64.8
PGSC0003DMT400058521	Potato	plastid	62.92	64.69
Bra019349.1-P	Field mustard	plastid	62.92	64.69
CDY68977	Canola	plastid	62.92	64.69
AT4G22890.1	Thale cress	plastid	63.53	64.51
KRH04003	Soybean	plastid	65.05	64.46
CDX94134	Canola	plastid	62.61	64.38
KRH77457	Soybean	plastid	61.7	64.24
Os08t0310500-00	Rice	plastid	25.53	64.12
VIT_02s0025g04710.t01	Wine grape	plastid	63.53	64.11
Solyc08g007770.2.1	Tomato	plastid	59.27	63.52
Solyc08g080050.2.1	Tomato	plastid	58.05	62.01
AT4G11960.1	Thale cress	plastid	58.97	61.98
CDX90812	Canola	plastid	59.88	61.56
Bra000757.1-P	Field mustard	plastid	59.88	61.56
CDY51552	Canola	plastid	59.57	61.25

Protein Annotations

EnsemblPlants:Os08t0526300-02	EnsemblPlantsGene:Os08g0526300	EntrezGene:4346096	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
PANTHER:PTHR31032	PANTHER:PTHR31032:SF6	ProteinID:BAD08743.1	ProteinID:BAD11572.1	ProteinID:BAF24211.1	ProteinID:BAT06344.1
RefSeq:XP_015650393.1	RefSeq:XP_015650394.1	SEG:seg	TMHMM:TMhelix	UniParc:UPI000023ABCE	UniProt:Q7F1E4
MapMan:1.1.6.1.2	:	:	:	:	:

Description

Similar to cDNA clone:001-038-D09, full insert sequence. (Os08t0526300-01);tRNA-binding arm domain containing protein. (Os08t0526300-02);tRNA-binding arm domain containing protein. (Os08t0526300-03)

Coordinates

chr8:+:26177321..26185117

Molecular Weight (calculated)

36561.5 Da

IEP (calculated)

4.626

GRAVY (calculated)

-0.068

Length

329 amino acids

Sequence
(BLAST)

001: MASLLPSPVF PTAAAAAAST SSSSRCRCRC RITTSSSAHG WSNCQGWRLH HRVWAAQAAD QQGGVQQQQQ QEENEDGVVD SNVLPYCSIN RKEKKTIGEM
101: EQEFLQALQA FYYDKKAVMS NEEFDNLKEE LMWEGSSVVM LSPDEQRLLE ASMAYVAGNP IMTDAEFDEL KLRLRKEGSE IVQEGPRCSL RSRKVYSDLT
201: VDYFKMFLLN VPAAVLALTL FFFLDDLTGF EITYLLELPE PFSFIFTWFA ALPLIFWVAQ AITSAIVKDF LILKGPCPNC GNENLSFFGT ILSVPSGGAR
301: NSVKCANCSS SLVYDSASRL ITLPETAEA

Best Arabidopsis Sequence Match ( AT4G22890.4 )
(BLAST)

001: MGSKMLFSLT SPRLFSAVSR KPSSSFSPSP PSPSSRTQWT QLSPGKSISL RRRVFLLPAK ATTEQSGGDN VDSNVLPYCS INKAEKKTIG EMEQEFLQAL
101: QSFYYDGKAI MSNEEFDNLK EELMWEGSSV VMLSSDEQRF LEASMAYVSG NPILNDEEYD KLKLKLKIDG SDIVSEGPRC SLRSKKVYSD LAVDYFKMLL
201: LNVPATVVAL GLFFFLDDIT GFEITYIMEL PEPYSFIFTW FAAVPVIVYL ALSITKLIIK DFLILKGPCP NCGTENTSFF GTILSISSGG KTNTVKCTNC
301: GTAMVYDSGS RLITLPEGSQ A

Arabidopsis Description

PGRL1APGR5-LIKE A [Source:UniProtKB/TrEMBL;Acc:A0A178UU76]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.