Factsheet for GSMUA_Achr2P12240_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
cytosol 1
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...
GSMUA_Achr1P02830_001
GSMUA_Achr4P17120_001
GSMUA_Achr5P01200_001
GSMUA_Achr5P14780_001
GSMUA_Achr8P13460_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G22890.1	GSMUA_Achr5P01200_001	AT1G60950.1	18243102
AT4G22890.1	GSMUA_Achr4P17120_001	AT4G02770.1	18243102
AT4G22890.1	GSMUA_Achr5P14780_001	AT4G02770.1	18243102
AT4G22890.1	GSMUA_Achr11P...	AT5G66190.1	18243102
AT4G22890.1	GSMUA_Achr1P02830_001	AT5G66190.1	18243102
AT4G22890.1	GSMUA_Achr8P13460_001	AT5G66190.1	18243102
AT4G22890.1	GSMUA_AchrUn_...	ATCG00720.1	18243102

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P28830_001	Banana	cytosol, peroxisome, plasma membrane	74.37	83.33
Zm00001d034904_P001	Maize	plastid	53.16	73.36
Os08t0526300-02	Rice	plastid	74.05	71.12
PGSC0003DMT400032525	Potato	plastid	70.89	70.22
KXG34948	Sorghum	plastid	72.15	68.67
KRH26378	Soybean	plasma membrane	31.96	68.24
KRH57278	Soybean	plastid	68.67	67.6
PGSC0003DMT400058521	Potato	plastid	68.04	67.19
KRH04003	Soybean	plastid	70.57	67.17
Solyc08g007770.2.1	Tomato	plastid	64.87	66.78
VIT_02s0025g04710.t01	Wine grape	plastid	68.67	66.56
KRH77457	Soybean	plastid	66.46	66.46
TraesCS5B01G560400.1	Wheat	plastid	67.41	65.54
TraesCS5D01G569800.1	Wheat	plastid	67.09	65.43
CDY68977	Canola	plastid	66.14	65.31
Bra019349.1-P	Field mustard	plastid	66.14	65.31
CDY41285	Canola	plastid	65.82	65.2
Bra013653.1-P	Field mustard	plastid	65.82	65.2
Os03t0857400-01	Rice	plasma membrane	66.77	65.12
Zm00001d019454_P001	Maize	plastid	68.99	65.07
Zm00001d034900_P001	Maize	plastid	66.14	64.91
CDY10819	Canola	plastid	65.51	64.89
HORVU5Hr1G124210.2	Barley	plastid	66.46	64.42
TraesCS4A01G319000.1	Wheat	plastid	66.14	64.31
Solyc08g080050.2.1	Tomato	plastid	62.66	64.29
AT4G22890.1	Thale cress	plastid	65.82	64.2
CDX94134	Canola	plastid	64.87	64.06
AT4G11960.1	Thale cress	plastid	62.03	62.62
CDX90812	Canola	plastid	63.29	62.5
Bra000757.1-P	Field mustard	plastid	63.29	62.5
CDY51552	Canola	plastid	62.34	61.56
KXG37086	Sorghum	plastid	65.19	50.74
Os08t0310500-00	Rice	plastid	13.61	32.82

Protein Annotations

EnsemblPlants:GSMUA_Achr2P12240_001	EnsemblPlants:GSMUA_Achr2T12240_001	EnsemblPlantsGene:GSMUA_Achr2G12240_001	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
PANTHER:PTHR31032	PANTHER:PTHR31032:SF6	SEG:seg	TMHMM:TMhelix	UniParc:UPI000295E849	UniProt:M0S7B5
MapMan:1.1.6.1.2	:	:	:	:	:

Description

PGR5-like protein 1A, chloroplastic [Source:GMGC_GENE;Acc:GSMUA_Achr2G12240_001]

Coordinates

chr2:+:14731945..14738184

Molecular Weight (calculated)

35219.4 Da

IEP (calculated)

4.696

GRAVY (calculated)

-0.046

Length

316 amino acids

Sequence
(BLAST)

001: MACLSSLLSP RRPVLPSSSP PLCSARGRRA FAPPLRSRCN RGLERLSLRF RATADQQGQV QDDEIVDGKI LQYCSIDKKD KKTLGELEQE FLQALQSFYY
101: DKKAIMSNEE FDNLKEELMW EGSSVVMLSP DEQKLLEASM AYVSGNPIMT DAEFDELKLR LKKEGSDIVQ EGPRCSLRSR KVYSDLSVDY FKMFLLNVPA
201: AVIALTLFFF LDDLTGFEIT YLLELPEPYG FIFTWFAALP LIFVLSQAIT NAIVKDFLIL KGACPNCGTE NVSFFGTLLS VPSGGSTNTV KCSNCGTALV
301: YDSNSRLITL PEPSEA

Best Arabidopsis Sequence Match ( AT4G22890.1 )
(BLAST)

001: MGSKMLFSLT SPRLFSAVSR KPSSSFSPSP PSPSSRTQWT QLSPGKSISL RRRVFLLPAK ATTEQSGPVG GDNVDSNVLP YCSINKAEKK TIGEMEQEFL
101: QALQSFYYDG KAIMSNEEFD NLKEELMWEG SSVVMLSSDE QRFLEASMAY VSGNPILNDE EYDKLKLKLK IDGSDIVSEG PRCSLRSKKV YSDLAVDYFK
201: MLLLNVPATV VALGLFFFLD DITGFEITYI MELPEPYSFI FTWFAAVPVI VYLALSITKL IIKDFLILKG PCPNCGTENT SFFGTILSIS SGGKTNTVKC
301: TNCGTAMVYD SGSRLITLPE GSQA

Arabidopsis Description

PGRL1APGR5-LIKE A [Source:UniProtKB/TrEMBL;Acc:A0A178UU76]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.