Factsheet for VIT_02s0025g04710.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 2
plasma membrane 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_04s0023g03510.t01
VIT_05s0020g03180.t01
VIT_07s0151g01000.t01
VIT_12s0035g00270.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G22890.1	VIT_12s0035g00270.t01	AT1G60950.1	18243102
AT4G22890.1	VIT_05s0020g03180.t01	AT4G02770.1	18243102
AT4G22890.1	VIT_07s0151g01000.t01	AT4G02770.1	18243102
AT4G22890.1	VIT_04s0023g03510.t01	AT5G66190.1	18243102

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400032525	Potato	plastid	73.31	74.92
GSMUA_Achr4P28830_001	Banana	cytosol, peroxisome, plasma membrane	64.42	74.47
KRH77457	Soybean	plastid	72.09	74.37
Bra000757.1-P	Field mustard	plastid	72.7	74.06
CDX90812	Canola	plastid	72.7	74.06
KRH57278	Soybean	plastid	72.7	73.83
KRH04003	Soybean	plastid	75.15	73.8
CDY51552	Canola	plastid	72.09	73.44
KRH26378	Soybean	plasma membrane	33.13	72.97
CDY68977	Canola	plastid	71.17	72.5
Bra019349.1-P	Field mustard	plastid	71.17	72.5
CDY41285	Canola	plastid	70.86	72.41
Bra013653.1-P	Field mustard	plastid	70.86	72.41
AT4G11960.1	Thale cress	plastid	69.33	72.2
PGSC0003DMT400058521	Potato	plastid	70.55	71.88
CDX94134	Canola	plastid	70.55	71.88
CDY10819	Canola	plastid	70.25	71.79
Solyc08g007770.2.1	Tomato	plastid	67.18	71.34
AT4G22890.1	Thale cress	plastid	70.55	70.99
Zm00001d034904_P001	Maize	plastid	49.39	70.31
GSMUA_Achr2P12240_001	Banana	plastid	66.56	68.67
Solyc08g080050.2.1	Tomato	plastid	64.11	67.86
Os03t0857400-01	Rice	plasma membrane	63.19	63.58
Os08t0526300-02	Rice	plastid	64.11	63.53
Zm00001d019454_P001	Maize	plastid	64.72	62.99
Zm00001d034900_P001	Maize	plastid	61.35	62.11
KXG34948	Sorghum	plastid	62.58	61.45
TraesCS5D01G569800.1	Wheat	plastid	61.04	61.42
TraesCS5B01G560400.1	Wheat	plastid	60.74	60.92
HORVU5Hr1G124210.2	Barley	plastid	60.43	60.43
TraesCS4A01G319000.1	Wheat	plastid	60.12	60.31
KXG37086	Sorghum	plastid	61.35	49.26
Os08t0310500-00	Rice	plastid	11.66	29.01

Protein Annotations

ArrayExpress:VIT_02s0025g04710	EMBL:FN596251	EnsemblPlants:VIT_02s0025g04710.t01	EnsemblPlantsGene:VIT_02s0025g04710	EntrezGene:100242824	EntrezGene:LOC100242824
GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	PANTHER:PTHR31032	PANTHER:PTHR31032:SF1	ProteinID:CBI34776
ProteinID:CBI34776.3	RefSeq:XP_002282120	RefSeq:XP_002282120.1	SEG:seg	TMHMM:TMhelix	unigene:Vvi.13817
UniParc:UPI00015CD0FD	UniProt:D7TWA1	wikigene:100242824	wikigene:LOC100242824	MapMan:1.1.6.1.2	:

Description

No Description!

Coordinates

chr2:-:4251602..4260927

Molecular Weight (calculated)

36383.8 Da

IEP (calculated)

4.580

GRAVY (calculated)

0.042

Length

326 amino acids

Sequence
(BLAST)

001: MATKLGFALT TAPRLFASSS RKPLISPASL SSASSCSRVE SFQLVGRQLR LSRRLFIISP KATADQQGQV QGDDVVDSKI LPYCSIDKKE KRSIGEMEQD
101: FLQALQSFYY EGKAIMSNEE FDNLKEELMW EGSSVVMLSS DEQKFLEASM AYVAGNPIMS DEEFDDLKIK LKIEGSEIVV EGPRCSLRSK KVYSDLSVDY
201: LKMFLLNVPA AVVALSLFFF LDDVTGFEIT FLLELQEPFS FIFTWFAAVP LIFWLSQTIT KFILKDFLIL KGPCPNCGTE NVSFFGTILS ISNGGTTNNL
301: KCSNCETQMV YDSKTRLITL PEGSEA

Best Arabidopsis Sequence Match ( AT4G22890.1 )
(BLAST)

001: MGSKMLFSLT SPRLFSAVSR KPSSSFSPSP PSPSSRTQWT QLSPGKSISL RRRVFLLPAK ATTEQSGPVG GDNVDSNVLP YCSINKAEKK TIGEMEQEFL
101: QALQSFYYDG KAIMSNEEFD NLKEELMWEG SSVVMLSSDE QRFLEASMAY VSGNPILNDE EYDKLKLKLK IDGSDIVSEG PRCSLRSKKV YSDLAVDYFK
201: MLLLNVPATV VALGLFFFLD DITGFEITYI MELPEPYSFI FTWFAAVPVI VYLALSITKL IIKDFLILKG PCPNCGTENT SFFGTILSIS SGGKTNTVKC
301: TNCGTAMVYD SGSRLITLPE GSQA

Arabidopsis Description

PGRL1APGR5-LIKE A [Source:UniProtKB/TrEMBL;Acc:A0A178UU76]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.