CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
plasma membrane 2
mitochondrion 3
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER89050
EER93246
EES02990
EES04249
EES13198
EES13199
KXG24178

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G22890.1	EER89050	AT1G20020.1	18243102
AT4G22890.1	EES04249	AT1G20020.1	18243102
AT4G22890.1	EES13198	AT1G60950.1	18243102
AT4G22890.1	EES13199	AT1G60950.1	18243102
AT4G22890.1	KXG24178	AT1G60950.1	18243102
AT4G22890.1	EER93246	AT4G02770.1	18243102
AT4G22890.1	EER89050	AT5G66190.1	18243102
AT4G22890.1	EES04249	AT5G66190.1	18243102
AT4G22890.1	EES02990	ATCG00720.1	18243102

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d019454_P001	Maize	plastid	79.52	78.81
GSMUA_Achr4P28830_001	Banana	cytosol, peroxisome, plasma membrane	66.87	78.72
Os08t0526300-02	Rice	plastid	74.1	74.77
GSMUA_Achr2P12240_001	Banana	plastid	68.67	72.15
KRH26378	Soybean	plasma membrane	30.12	67.57
KRH57278	Soybean	plastid	64.46	66.67
KRH77457	Soybean	plastid	62.35	65.51
PGSC0003DMT400032525	Potato	plastid	62.65	65.2
KRH04003	Soybean	plastid	64.76	64.76
PGSC0003DMT400058521	Potato	plastid	62.05	64.38
CDX94134	Canola	plastid	61.45	63.75
CDY41285	Canola	plastid	61.14	63.64
CDY10819	Canola	plastid	61.14	63.64
Solyc08g080050.2.1	Tomato	plastid	59.04	63.64
Bra013653.1-P	Field mustard	plastid	61.14	63.64
CDY68977	Canola	plastid	61.14	63.44
Bra019349.1-P	Field mustard	plastid	61.14	63.44
Solyc08g007770.2.1	Tomato	plastid	58.43	63.19
VIT_02s0025g04710.t01	Wine grape	plastid	61.45	62.58
AT4G22890.1	Thale cress	plastid	60.84	62.35
AT4G11960.1	Thale cress	plastid	58.73	62.3
Bra000757.1-P	Field mustard	plastid	58.73	60.94
CDX90812	Canola	plastid	58.73	60.94
CDY51552	Canola	plastid	58.13	60.31
KXG37086	Sorghum	plastid	62.05	50.74
Os08t0310500-00	Rice	plastid	17.47	44.27

Protein Annotations

EnsemblPlants:KXG34948	EnsemblPlantsGene:SORBI_3002G112400	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	PANTHER:PTHR31032
PANTHER:PTHR31032:SF6	ProteinID:KXG34948	ProteinID:KXG34948.1	ProteinID:KXG34950.1	SEG:seg	TMHMM:TMhelix
UniParc:UPI0001FCD181	UniProt:A0A1B6QAN2	MapMan:1.1.6.1.2	:	:	:

Description

hypothetical protein

Coordinates

chr2:-:13697244..13702882

Molecular Weight (calculated)

36700.2 Da

IEP (calculated)

4.650

GRAVY (calculated)

0.032

Length

332 amino acids

Sequence
(BLAST)

001: MASDARLSLP CRLPSLLPPP VLLRRLPRAA AAAAASTSPR CRVASTAAAA PARARGRFRP RASEVEGQGP VQQQQQVEDE VVDSNVLQYC SIDRKKKKTI
101: GEMEQEFLQA LQAFYYDQKA IMSNEEFDNL KEELMWEGSS VVMLSADEQK LLEASMAYVS GNPIMTDQEF DELKLRLKKE GSDIVTEGPR CSLRSRKVYS
201: DLTVDYFKML LLYVPAAVVA LTLFFFLDDL TGFEITLLLE LPEPFSFIFT WFAALPLIFW VAQAFTNVIV KDFLILKGPC PNCGTENLSF FGTILSVSSG
301: GSTNSVKCAS CGTVLEYDSA SRLITLPEPA EA

Best Arabidopsis Sequence Match ( AT4G22890.1 )
(BLAST)

001: MGSKMLFSLT SPRLFSAVSR KPSSSFSPSP PSPSSRTQWT QLSPGKSISL RRRVFLLPAK ATTEQSGPVG GDNVDSNVLP YCSINKAEKK TIGEMEQEFL
101: QALQSFYYDG KAIMSNEEFD NLKEELMWEG SSVVMLSSDE QRFLEASMAY VSGNPILNDE EYDKLKLKLK IDGSDIVSEG PRCSLRSKKV YSDLAVDYFK
201: MLLLNVPATV VALGLFFFLD DITGFEITYI MELPEPYSFI FTWFAAVPVI VYLALSITKL IIKDFLILKG PCPNCGTENT SFFGTILSIS SGGKTNTVKC
301: TNCGTAMVYD SGSRLITLPE GSQA

Arabidopsis Description

PGRL1APGR5-LIKE A [Source:UniProtKB/TrEMBL;Acc:A0A178UU76]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.