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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 7
  • mitochondrion 2
  • plasma membrane 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:mitochondrion, plasma membrane, plastid
BaCelLo:plastid
ChloroP:plastid
iPSORT:mitochondrion
MultiLoc:mitochondrion
Plant-mPloc:plasma membrane
Predotar:plastid
PProwler:plastid
TargetP:plastid
WoLF PSORT:plastid
YLoc:plastid
 plastid: 22908117
nucleus: 28394025
msms PMID: 28394025 doi
AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
msms PMID: 22908117 doi
C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech
Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.
PPI

Inferred distinct locusB in Crop

locusBlocations
Solyc01g007530.2.1
Solyc01g007540.2.1
Solyc01g103920.2.1
Solyc02g062130.2.1
Solyc02g083810.2.1
Solyc06g054260.1.1
Solyc07g032450.1.1
Solyc10g044520.1.1
Solyc10g075160.1.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G22890.1 Solyc01g103920.2.1 AT1G60950.1 18243102
AT4G22890.1 Solyc10g044520.1.1 AT1G60950.1 18243102
AT4G22890.1 Solyc10g075160.1.1 AT1G60950.1 18243102
AT4G22890.1 Solyc06g054260.1.1 AT4G02770.1 18243102
AT4G22890.1 Solyc02g062130.2.1 AT5G66190.1 18243102
AT4G22890.1 Solyc02g083810.2.1 AT5G66190.1 18243102
AT4G22890.1 Solyc01g007530.2.1 ATCG00720.1 18243102
AT4G22890.1 Solyc01g007540.2.1 ATCG00720.1 18243102
AT4G22890.1 Solyc07g032450.1.1 ATCG00720.1 18243102
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400058521 Potato plastid 85.39 82.19
Solyc08g007770.2.1 Tomato plastid 79.22 79.48
GSMUA_Achr4P28830_001 Banana cytosol, peroxisome, plasma membrane 62.66 68.44
KRH77457 Soybean plastid 68.83 67.09
Zm00001d034904_P001 Maize plastid 49.68 66.81
KRH57278 Soybean plastid 68.83 66.04
CDY51552 Canola plastid 66.88 64.38
CDY68977 Canola plastid 66.88 64.38
CDX94134 Canola plastid 66.88 64.38
Bra019349.1-P Field mustard plastid 66.88 64.38
AT4G11960.1 Thale cress plastid 65.26 64.22
VIT_02s0025g04710.t01 Wine grape plastid 67.86 64.11
CDX90812 Canola plastid 66.56 64.06
Bra000757.1-P Field mustard plastid 66.56 64.06
CDY10819 Canola plastid 66.23 63.95
KRH04003 Soybean plastid 68.83 63.86
CDY41285 Canola plastid 65.91 63.64
Bra013653.1-P Field mustard plastid 65.91 63.64
AT4G22890.1 Thale cress plastid 66.56 63.27
GSMUA_Achr2P12240_001 Banana plastid 64.29 62.66
KRH26378 Soybean plasma membrane 29.87 62.16
Zm00001d034900_P001 Maize plastid 62.01 59.32
KXG34948 Sorghum plastid 63.64 59.04
Os03t0857400-01 Rice plasma membrane 62.01 58.95
Os08t0526300-02 Rice plastid 62.01 58.05
TraesCS5B01G560400.1 Wheat plastid 61.04 57.85
HORVU5Hr1G124210.2 Barley plastid 60.71 57.36
TraesCS4A01G319000.1 Wheat plastid 60.39 57.23
TraesCS5D01G569800.1 Wheat plastid 60.06 57.1
Zm00001d019454_P001 Maize plastid 62.01 57.01
KXG37086 Sorghum plastid 60.71 46.06
Os08t0310500-00 Rice plastid 10.06 23.66
Protein Annotations
EnsemblPlants:Solyc08g080050.2.1EnsemblPlantsGene:Solyc08g080050.2GO:GO:0005575GO:GO:0016020GO:GO:0016021PANTHER:PTHR31032
PANTHER:PTHR31032:SF1SEG:segTMHMM:TMhelixUniParc:UPI000276B6FAUniProt:K4CP05MapMan:1.1.6.1.2
Description
No Description!
Coordinates
chr8:+:63389455..63393957
Molecular Weight (calculated)
34988.6 Da
IEP (calculated)
7.914
GRAVY (calculated)
0.006
Length
308 amino acids
Sequence
(BLAST)
001: MATKLGFSIT SSKLFHAPFK RPIFSASSSP RPPLIPFGVS RKLSIRRKLL VLSPKAAADQ PGQVKEEEEE DTKILQYCSL DRKQKKSMGE MEQEFLQALQ
101: AFYYEGKAIM SNEEFDNLKE ELMWEGSSVV MLSADEQRFL EASMAYVSGN PILTDKEFDK LKLKLKMDGS DIVVEGPRCS LRSRKVYSDL YVDYLKMFLL
201: NVPAAVVALG LFFFLDDLTG FEITYLLELP EPFSFIFVWF AALPFILWLS FTFTNFIVKD FLILKGPCPN CGTDNTSFFG TILSVSSGGK TNKVKFVLRR
301: WSMIQPHA
Best Arabidopsis Sequence Match ( AT4G22890.1 )
(BLAST)
001: MGSKMLFSLT SPRLFSAVSR KPSSSFSPSP PSPSSRTQWT QLSPGKSISL RRRVFLLPAK ATTEQSGPVG GDNVDSNVLP YCSINKAEKK TIGEMEQEFL
101: QALQSFYYDG KAIMSNEEFD NLKEELMWEG SSVVMLSSDE QRFLEASMAY VSGNPILNDE EYDKLKLKLK IDGSDIVSEG PRCSLRSKKV YSDLAVDYFK
201: MLLLNVPATV VALGLFFFLD DITGFEITYI MELPEPYSFI FTWFAAVPVI VYLALSITKL IIKDFLILKG PCPNCGTENT SFFGTILSIS SGGKTNTVKC
301: TNCGTAMVYD SGSRLITLPE GSQA
Arabidopsis Description
PGRL1APGR5-LIKE A [Source:UniProtKB/TrEMBL;Acc:A0A178UU76]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.