Factsheet for Solyc02g062130.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

extracellular: 22364583
plastid: 26371478
plastid: 28183294
nucleus: 28394025
extracellular: 29876421

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

msms PMID: 22364583 doi

P Shah, AL Powell, R Orlando, C Bergmann, G Gutierrez-Sanchez

Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia, United States.

msms PMID: 28183294 doi

R Tamburino, M Vitale, A Ruggiero, M Sassi, L Sannino, S Arena, A Costa, G Batelli, N Zambrano, A Scaloni, S Grillo, N Scotti

Center of Genetics Engineering (CEINGE) Biotecnologie Avanzate S.c. a R.l, via Pansini, 80100, Napoli, Italy., Department of Molecular Medicine and Medical Biotechnology, University of Naples Federico II, via Pansini, 80100, Napoli, Italy., Institute for the Animal Production System in the Mediterranean Environment, National Research Council of Italy (CNR-ISPAAM), via Argine 1085, 80147, Napoli, Italy., Institute of Biosciences and BioResources, National Research Council of Italy (CNR-IBBR), via Università 133, 80055, Portici, NA, Italy., Institute of Biosciences and BioResources, National Research Council of Italy (CNR-IBBR), via Università 133, 80055, Portici, NA, Italy. nscotti@unina.it.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc08g007770.2.1
Solyc08g080050.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G66190.1	Solyc08g007770.2.1	AT4G22890.1	18243102
AT5G66190.1	Solyc08g080050.2.1	AT4G22890.1	18243102

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH69775	Soybean	plastid	85.08	85.08
KRH28804	Soybean	plastid	84.53	84.53
VIT_04s0023g03510.t01	Wine grape	plastid	83.98	83.98
KRH08061	Soybean	nucleus, plastid	83.7	83.7
VIT_18s0001g14450.t01	Wine grape	cytosol, plastid	83.15	82.92
GSMUA_Achr11P...	Banana	plastid	80.11	81.01
Solyc02g083810.2.1	Tomato	plastid	81.49	79.73
AT5G66190.1	Thale cress	plastid	79.28	79.72
GSMUA_Achr1P02830_001	Banana	plastid	79.28	79.72
CDX81408	Canola	plastid	79.83	79.61
CDY18592	Canola	plastid	79.56	79.56
Bra037182.1-P	Field mustard	plastid	79.56	79.34
Zm00001d045575_P001	Maize	plastid	73.2	74.65
Os06t0107700-01	Rice	plastid	74.59	74.59
TraesCS6B01G015000.1	Wheat	plastid	74.59	74.38
EES04249	Sorghum	plastid	75.41	74.18
EER89050	Sorghum	plastid	73.48	73.68
Zm00001d011833_P001	Maize	plastid	74.59	73.17
TraesCS7A01G020500.1	Wheat	plastid	72.93	73.13
TraesCS6D01G012200.1	Wheat	plastid, unclear	72.65	72.85
TraesCS7D01G016800.1	Wheat	plastid	72.65	72.65
TraesCS6A01G009200.1	Wheat	plastid	72.65	72.45
Os02t0103800-01	Rice	plastid	72.1	71.31
TraesCS4A01G472500.1	Wheat	plastid	71.27	71.27
HORVU7Hr1G002210.8	Barley	plastid	68.51	68.89
GSMUA_Achr8P13460_001	Banana	plastid	79.28	68.01
HORVU6Hr1G000620.2	Barley	plastid	72.93	66.0
CDY55097	Canola	vacuole	67.68	64.64
Zm00001d042049_P001	Maize	plastid	73.76	54.83
CDX83820	Canola	endoplasmic reticulum, plasma membrane	20.99	43.93
Solyc02g024050.2.1	Tomato	extracellular	44.2	42.78
CDY57760	Canola	plastid	78.45	28.29

Protein Annotations

KEGG:00195+1.18.1.2	MapMan:1.1.5.2.1	Gene3D:2.40.30.10	Gene3D:3.40.50.80	InterPro:FNR	InterPro:FNR_plant_Cyanobacteria
InterPro:Fd_Rdtase_FAD-bd	InterPro:Flavoprot_Pyr_Nucl_cyt_Rdtase	GO:GO:0003674	GO:GO:0003824	GO:GO:0004324	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507
GO:GO:0009536	GO:GO:0016491	GO:GO:0055114	InterPro:IPR017927	UniProt:K4B6A3	InterPro:OxRdtase_FAD/NAD-bd
PFAM:PF00175	PIRSF:PIRSF000361	PIRSF:PIRSF501178	PRINTS:PR00371	PFscan:PS51384	PANTHER:PTHR43314
PANTHER:PTHR43314:SF7	InterPro:Riboflavin_synthase-like_b-brl	SUPFAM:SSF52343	SUPFAM:SSF63380	EnsemblPlantsGene:Solyc02g062130.2	EnsemblPlants:Solyc02g062130.2.1
UniParc:UPI0002768097	SEG:seg	:	:	:	:

Description

Ferredoxin--NADP reductase [Source:UniProtKB/TrEMBL;Acc:K4B6A3]

Coordinates

chr2:-:33705320..33708519

Molecular Weight (calculated)

40582.0 Da

IEP (calculated)

8.715

GRAVY (calculated)

-0.286

Length

362 amino acids

Sequence
(BLAST)

001: MAAALSASVS LQSSNSTSLS IKTIFISPEN ITFNKVLLCN RNVSVSRKVF HIRAQLTTEI PAKVAKVSKK QDEGVVVNKF RPKDPYIGRC LLNTKITGDD
101: APGETWHMVF STEGEIPYRE GQSIGVIPDG VDSNGKPHKL RLYSIASSAL GDFGDSKTVS LCVKRLVYTN DKGEIVKGVC SNFLCDLKPG AEVKITGPVG
201: KEMLMPKDPN ATVIMLATGT GIAPFRGFLW KMFFEKHEDY KFNGLAWLFL GVPTSSSLLY KEEFEKMKEK APENFRLDFA VSREQINEKG EKMYIQTRMA
301: EYAEELWTLL KKDSTFVYMC GLKGMEQGID DIMTSLAERD GINWANYKKQ LKKAEQWNVE VY

Best Arabidopsis Sequence Match ( AT5G66190.1 )
(BLAST)

001: MAAAISAAVS LPSSKSSSLL TKISSVSPQR IFLKKSTVCY RRVVSVKAQV TTDTTEAPPV KVVKESKKQE EGIVVNKFKP KNPYTGRCLL NTKITGDDAP
101: GETWHIVFTT EGEVPYREGQ SIGVIPEGID KNGKPHKLRL YSIASSAIGD FGDSKTVSLC VKRLVYTNDG GEIVKGVCSN FLCDLKPGDE AKITGPVGKE
201: MLMPKDPNAT IIMLGTGTGI APFRSFLWKM FFEEHEDYKF NGLAWLFLGV PTSSSLLYKE EFEKMKEKNP DNFRLDFAVS REQTNEKGEK MYIQTRMAEY
301: AEELWELLKK DNTFVYMCGL KGMEKGIDDI MVSLAAKDGI DWLEYKKQLK RSEQWNVEVY

Arabidopsis Description

LFNR1Ferredoxin--NADP reductase, leaf isozyme 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FKW6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.