Factsheet for Zm00001d042049_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d019454_P001
Zm00001d034900_P001
Zm00001d034904_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G20020.1	Zm00001d019454_P001	AT4G22890.1	18243102
AT1G20020.1	Zm00001d034900_P001	AT4G22890.1	18243102
AT1G20020.1	Zm00001d034904_P001	AT4G22890.1	18243102
AT5G66190.1	Zm00001d019454_P001	AT4G22890.1	18243102
AT5G66190.1	Zm00001d034900_P001	AT4G22890.1	18243102
AT5G66190.1	Zm00001d034904_P001	AT4G22890.1	18243102

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES04249	Sorghum	plastid	64.07	84.78
Zm00001d011833_P001	Maize	plastid	62.22	82.11
TraesCS6B01G015000.1	Wheat	plastid	60.37	80.99
TraesCS6A01G009200.1	Wheat	plastid	59.14	79.34
TraesCS6D01G012200.1	Wheat	plastid, unclear	58.73	79.22
VIT_04s0023g03510.t01	Wine grape	plastid	57.08	76.8
AT5G66190.1	Thale cress	plastid	56.67	76.67
Zm00001d045575_P001	Maize	plastid	55.65	76.34
GSMUA_Achr11P...	Banana	plastid	56.06	76.26
KRH28804	Soybean	plastid	56.47	75.97
KRH08061	Soybean	nucleus, plastid	56.26	75.69
CDY18592	Canola	plastid	56.06	75.41
PGSC0003DMT400009192	Potato	extracellular	56.06	75.41
GSMUA_Achr1P02830_001	Banana	plastid	55.65	75.28
Bra037182.1-P	Field mustard	plastid	56.06	75.21
CDX81408	Canola	plastid	56.06	75.21
Os02t0103800-01	Rice	plastid	56.26	74.86
KRH69775	Soybean	plastid	55.65	74.86
VIT_18s0001g14450.t01	Wine grape	cytosol, plastid	55.03	73.83
Solyc02g062130.2.1	Tomato	plastid	54.83	73.76
HORVU6Hr1G000620.2	Barley	plastid	58.93	71.75
Bra016481.1-P	Field mustard	plastid	52.36	70.05
CDY57601	Canola	plastid	52.36	69.48
Bra012203.1-P	Field mustard	plastid	52.16	69.21
AT1G20020.1	Thale cress	plastid	52.36	69.11
Solyc02g083810.2.1	Tomato	plastid	52.36	68.92
CDY43420	Canola	plastid	51.13	68.41
CDY62940	Canola	plastid	51.75	67.92
CDX83730	Canola	plastid	52.57	67.9
GSMUA_Achr8P13460_001	Banana	plastid	56.47	65.17
CDY55097	Canola	vacuole	48.46	62.27
Zm00001d023296_P002	Maize	plastid	25.87	50.81
CDX83820	Canola	endoplasmic reticulum, plasma membrane	15.61	43.93
Zm00001d005458_P003	Maize	plastid	18.28	43.84
Zm00001d034099_P002	Maize	plastid	30.18	39.73
Zm00001d034345_P001	Maize	plastid	31.83	39.54
Zm00001d018794_P003	Maize	plastid	32.24	38.86
CDY57760	Canola	plastid	55.03	26.69

Protein Annotations

KEGG:00195+1.18.1.2	MapMan:1.1.5.2.1	Gene3D:2.40.30.10	Gene3D:3.40.50.80	EntrezGene:541626	UniProt:A0A1D6N0R1
InterPro:FNR	InterPro:FNR_plant_Cyanobacteria	InterPro:Fd_Rdtase_FAD-bd	InterPro:Flavoprot_Pyr_Nucl_cyt_Rdtase	GO:GO:0003674	GO:GO:0003824
GO:GO:0004324	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150
GO:GO:0008152	GO:GO:0009507	GO:GO:0009536	GO:GO:0016491	GO:GO:0055114	InterPro:IPR017927
ProteinID:ONM34375.1	InterPro:OxRdtase_FAD/NAD-bd	PFAM:PF00175	PIRSF:PIRSF000361	PIRSF:PIRSF501178	PRINTS:PR00371
PFscan:PS51384	PANTHER:PTHR43314	PANTHER:PTHR43314:SF3	InterPro:Riboflavin_synthase-like_b-brl	SUPFAM:SSF52343	SUPFAM:SSF63380
UniParc:UPI000843B3C3	EnsemblPlantsGene:Zm00001d042049	EnsemblPlants:Zm00001d042049_P001	EnsemblPlants:Zm00001d042049_T001	SEG:seg	:

Description

Ferredoxin

Coordinates

chr3:-:148582474..148588248

Molecular Weight (calculated)

54853.9 Da

IEP (calculated)

6.140

GRAVY (calculated)

-0.470

Length

487 amino acids

Sequence
(BLAST)

001: MAAVTAAAVS LPSSSSSPAA AKAKASASAS PSSPCGHLQF PRRHGGPRAV RLRVQVSTTE TAEAEPVKKL EKVSKKQEEG LVTNKYKPKE PYVGRCLLNT
101: RITGDQAPGE TWHMVFSTEG EVPYREGQSI GVIADGEDKN GKPHKLRLYS IASSALGDFG DSKTVSLCVK RLVYTNDQGE VVKGVCSNFL CDLKPGAEVK
201: ITGPVGKEML MPKDPNATII MLATGTGIAP FRSFLWKMFF EEHEDYKYTG LAWLFLGVPT SDTLLYKEEL EKMKEMAPDN FRLDFAVSRE QTNAAGEKMY
301: IQTRMAEYKE ELWELLKKDN TYVYMCGLKG MEKGIDDIML DLAAKDGINW LDYKKQLKKS EQWNVEYTGL AWLFLGVPTS DTLLYKEELE KMKEMAPDNF
401: RLDFAVSREQ TNAAGEKMYI QTRMAEYKEE LWELLKKDNT YVYMCGLKGM EKGIDDIMLD LAAKDGINWL DYKKQLKKSE QWNVEVY

Best Arabidopsis Sequence Match ( AT5G66190.1 )
(BLAST)

001: MAAAISAAVS LPSSKSSSLL TKISSVSPQR IFLKKSTVCY RRVVSVKAQV TTDTTEAPPV KVVKESKKQE EGIVVNKFKP KNPYTGRCLL NTKITGDDAP
101: GETWHIVFTT EGEVPYREGQ SIGVIPEGID KNGKPHKLRL YSIASSAIGD FGDSKTVSLC VKRLVYTNDG GEIVKGVCSN FLCDLKPGDE AKITGPVGKE
201: MLMPKDPNAT IIMLGTGTGI APFRSFLWKM FFEEHEDYKF NGLAWLFLGV PTSSSLLYKE EFEKMKEKNP DNFRLDFAVS REQTNEKGEK MYIQTRMAEY
301: AEELWELLKK DNTFVYMCGL KGMEKGIDDI MVSLAAKDGI DWLEYKKQLK RSEQWNVEVY

Arabidopsis Description

LFNR1Ferredoxin--NADP reductase, leaf isozyme 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FKW6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.