CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH04003
KRH26378
KRH57278
KRH77457

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G66190.1	KRH04003	AT4G22890.1	18243102
AT5G66190.1	KRH26378	AT4G22890.1	18243102
AT5G66190.1	KRH57278	AT4G22890.1	18243102
AT5G66190.1	KRH77457	AT4G22890.1	18243102

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH69775	Soybean	plastid	97.24	97.24
KRH28804	Soybean	plastid	92.54	92.54
VIT_04s0023g03510.t01	Wine grape	plastid	88.12	88.12
PGSC0003DMT400009192	Potato	extracellular	85.08	85.08
AT5G66190.1	Thale cress	plastid	84.25	84.72
GSMUA_Achr11P...	Banana	plastid	83.15	84.08
KRH76652	Soybean	cytosol, peroxisome, plastid	18.51	83.75
Solyc02g062130.2.1	Tomato	plastid	83.7	83.7
CDX81408	Canola	plastid	83.7	83.47
CDY18592	Canola	plastid	83.43	83.43
Bra037182.1-P	Field mustard	plastid	83.43	83.2
GSMUA_Achr1P02830_001	Banana	plastid	82.6	83.06
Solyc02g083810.2.1	Tomato	plastid	79.83	78.11
Zm00001d045575_P001	Maize	plastid	75.69	77.18
EER89050	Sorghum	plastid	76.24	76.45
Os06t0107700-01	Rice	plastid	75.69	75.69
EES04249	Sorghum	plastid	76.8	75.54
TraesCS6B01G015000.1	Wheat	plastid	74.86	74.66
TraesCS7D01G016800.1	Wheat	plastid	74.31	74.31
Zm00001d011833_P001	Maize	plastid	75.69	74.25
TraesCS6D01G012200.1	Wheat	plastid, unclear	74.03	74.24
TraesCS6A01G009200.1	Wheat	plastid	74.31	74.1
TraesCS7A01G020500.1	Wheat	plastid	73.48	73.68
TraesCS4A01G472500.1	Wheat	plastid	73.2	73.2
Os02t0103800-01	Rice	plastid	73.2	72.4
HORVU7Hr1G002210.8	Barley	plastid	70.17	70.56
GSMUA_Achr8P13460_001	Banana	plastid	82.04	70.38
CDY55097	Canola	vacuole	70.99	67.81
HORVU6Hr1G000620.2	Barley	plastid	73.48	66.5
Zm00001d042049_P001	Maize	plastid	75.69	56.26
CDX83820	Canola	endoplasmic reticulum, plasma membrane	22.38	46.82
KRH36793	Soybean	plastid	46.41	44.56
KRH11782	Soybean	nucleus, plastid	45.86	44.03
CDY57760	Canola	plastid	81.49	29.38

Protein Annotations

KEGG:00195+1.18.1.2	MapMan:1.1.5.2.1	EntrezGene:100793840	Gene3D:2.40.30.10	Gene3D:3.40.50.80	UniProt:A0A0R4J5K2
EMBL:ACUP02010137	InterPro:FNR	InterPro:FNR_plant_Cyanobacteria	InterPro:Fd_Rdtase_FAD-bd	InterPro:Flavoprot_Pyr_Nucl_cyt_Rdtase	EnsemblPlantsGene:GLYMA_16G127300
GO:GO:0003674	GO:GO:0003824	GO:GO:0004324	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009536	GO:GO:0016491
GO:GO:0055114	InterPro:IPR017927	EnsemblPlants:KRH08061	ProteinID:KRH08061	ProteinID:KRH08061.1	InterPro:OxRdtase_FAD/NAD-bd
PFAM:PF00175	PIRSF:PIRSF000361	PIRSF:PIRSF501178	PRINTS:PR00371	PFscan:PS51384	PANTHER:PTHR43314
PANTHER:PTHR43314:SF7	MetaCyc:PWY-101	InterPro:Riboflavin_synthase-like_b-brl	SUPFAM:SSF52343	SUPFAM:SSF63380	UniParc:UPI0000F35DA8
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr16:-:27907598..27910994

Molecular Weight (calculated)

40572.7 Da

IEP (calculated)

8.082

GRAVY (calculated)

-0.370

Length

362 amino acids

Sequence
(BLAST)

001: MAAAVSAAVS FPSTKSTSLP SRTSIITPER VVFKKASLQY RDVCSSGRVV SIRAQVTTEA PAKVEKESKK QDEGVVVNKF KPKTPYVGRC LLNTKITGDD
101: APGETWHMVF STEGEIPYRE GQSIGVIPDG VDKNGKPHKL RLYSIASSAI GDFGDSKTVS LCVKRLVYTN ENGEIVKGVC SNFLCDLKPG AEVTITGPVG
201: KEMLMPKDPN ATIIMLGTGT GIAPFRSFLW KMFFEKHEDY KFNGLAWLFL GVPTSSSLLY KEEFEKMQEK YPDNFRLDFA VSREQTNENG EKMYIQTRMA
301: QYAEELWELL KKDNTFVYMC GLKGMEKGID DIMVSLAAKD GIDWTEYKRQ LKKSEQWNVE VY

Best Arabidopsis Sequence Match ( AT5G66190.1 )
(BLAST)

001: MAAAISAAVS LPSSKSSSLL TKISSVSPQR IFLKKSTVCY RRVVSVKAQV TTDTTEAPPV KVVKESKKQE EGIVVNKFKP KNPYTGRCLL NTKITGDDAP
101: GETWHIVFTT EGEVPYREGQ SIGVIPEGID KNGKPHKLRL YSIASSAIGD FGDSKTVSLC VKRLVYTNDG GEIVKGVCSN FLCDLKPGDE AKITGPVGKE
201: MLMPKDPNAT IIMLGTGTGI APFRSFLWKM FFEEHEDYKF NGLAWLFLGV PTSSSLLYKE EFEKMKEKNP DNFRLDFAVS REQTNEKGEK MYIQTRMAEY
301: AEELWELLKK DNTFVYMCGL KGMEKGIDDI MVSLAAKDGI DWLEYKKQLK RSEQWNVEVY

Arabidopsis Description

LFNR1Ferredoxin--NADP reductase, leaf isozyme 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FKW6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.