Factsheet for TraesCS6D01G012200.1

Subcellular Localization

min:

: max

Winner_takes_all: unclear, plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid, unclear
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

unclear: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G319000.1
TraesCS5B01G560400.1
TraesCS5D01G569800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G20020.1	TraesCS4A01G319000.1	AT4G22890.1	18243102
AT1G20020.1	TraesCS5B01G560400.1	AT4G22890.1	18243102
AT1G20020.1	TraesCS5D01G569800.1	AT4G22890.1	18243102
AT5G66190.1	TraesCS4A01G319000.1	AT4G22890.1	18243102
AT5G66190.1	TraesCS5B01G560400.1	AT4G22890.1	18243102
AT5G66190.1	TraesCS5D01G569800.1	AT4G22890.1	18243102

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G015000.1	Wheat	plastid	91.69	91.18
TraesCS6A01G009200.1	Wheat	plastid	91.14	90.63
EES04249	Sorghum	plastid	81.44	79.89
HORVU6Hr1G000620.2	Barley	plastid	84.49	76.25
VIT_04s0023g03510.t01	Wine grape	plastid	75.9	75.69
Zm00001d011833_P001	Maize	plastid	77.01	75.34
Os02t0103800-01	Rice	plastid	75.9	74.86
PGSC0003DMT400009192	Potato	extracellular	74.52	74.31
KRH69775	Soybean	plastid	74.52	74.31
GSMUA_Achr11P...	Banana	plastid	73.68	74.3
KRH28804	Soybean	plastid	74.24	74.03
KRH08061	Soybean	nucleus, plastid	74.24	74.03
GSMUA_Achr1P02830_001	Banana	plastid	73.13	73.33
AT5G66190.1	Thale cress	plastid	73.13	73.33
TraesCS7D01G016800.1	Wheat	plastid	73.41	73.2
CDY18592	Canola	plastid	73.13	72.93
Bra037182.1-P	Field mustard	plastid	73.13	72.73
Solyc02g062130.2.1	Tomato	plastid	72.85	72.65
VIT_18s0001g14450.t01	Wine grape	cytosol, plastid	72.58	72.18
CDX81408	Canola	plastid	72.58	72.18
CDY57601	Canola	plastid	69.25	68.12
Bra012203.1-P	Field mustard	plastid	69.25	68.12
Bra016481.1-P	Field mustard	plastid	68.14	67.58
Solyc02g083810.2.1	Tomato	plastid	68.98	67.3
AT1G20020.1	Thale cress	plastid	68.14	66.67
CDY43420	Canola	plastid	67.04	66.48
CDY62940	Canola	plastid	67.59	65.77
CDX83730	Canola	plastid	68.42	65.52
GSMUA_Achr8P13460_001	Banana	plastid	73.68	63.03
CDY55097	Canola	vacuole	65.93	62.8
Zm00001d042049_P001	Maize	plastid	79.22	58.73
CDX83820	Canola	endoplasmic reticulum, plasma membrane	21.33	44.51
TraesCS2D01G253400.1	Wheat	golgi	42.38	40.48
TraesCS5D01G431300.1	Wheat	plastid	41.0	39.36
CDY57760	Canola	plastid	72.02	25.9

Protein Annotations

KEGG:00195+1.18.1.2	MapMan:1.1.5.2.1	Gene3D:2.40.30.10	Gene3D:3.40.50.80	InterPro:FNR	InterPro:FNR_plant_Cyanobacteria
InterPro:Fd_Rdtase_FAD-bd	InterPro:Flavoprot_Pyr_Nucl_cyt_Rdtase	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008152	GO:GO:0009536	GO:GO:0009579
GO:GO:0016020	GO:GO:0016491	GO:GO:0055114	GO:GO:0098807	InterPro:IPR017927	InterPro:OxRdtase_FAD-bd_dom
InterPro:OxRdtase_FAD/NAD-bd	PFAM:PF00175	PFAM:PF00970	PIRSF:PIRSF000361	PIRSF:PIRSF501178	PRINTS:PR00371
PFscan:PS51384	PANTHER:PTHR43314	PANTHER:PTHR43314:SF3	InterPro:Riboflavin_synthase-like_b-brl	SUPFAM:SSF52343	SUPFAM:SSF63380
EnsemblPlantsGene:TraesCS6D01G012200	EnsemblPlants:TraesCS6D01G012200.1	TIGR:cd06208	SEG:seg	:	:

Description

No Description!

Coordinates

chr6D:-:4773848..4775641

Molecular Weight (calculated)

40024.9 Da

IEP (calculated)

6.909

GRAVY (calculated)

-0.381

Length

361 amino acids

Sequence
(BLAST)

001: MPAQLTAALP SYSPAAKAAG GSSASCTASH FLSYPTRRLR NGVRAQVSTT ETAEPAPAAP AKPVKISKKQ DEGVVTNKYR PKEPYVGRCL LNTRLTGDNA
101: PGETWHMVFS TEGEVPYREG QSIGVIADGE DKNGKPHKLR LYSIASSALG DFGDSKTVSL CVKRLVYTND AGEVVKGVCS NFLCDLKPGS EVKITGPVGK
201: EMLMPKDPNA TIIMLATGTG IAPFRSFLWK MFFEQHEDYK FNGLAWLFLG VPTSDTLLYK EEFEKMVEIG GENFRLDFAV SREQTNAAGE KMYIQTRMAE
301: YKEELWELLK KDNTYVYMCG LKGMEKGIDD IMVDLAAKDG IDWIDYKKQL KKAEQWNVEV Y

Best Arabidopsis Sequence Match ( AT1G20020.1 )
(BLAST)

001: MATTMNAAVS LTSSNSSSFP ATSCAIAPER IRFTKGAFYY KSNNVVTGKR VFSIKAQITT ETDTPTPAKK VEKVSKKNEE GVIVNRYRPK EPYTGKCLLN
101: TKITADDAPG ETWHMVFSHQ GEIPYREGQS VGVIADGIDK NGKPHKVRLY SIASSALGDL GNSETVSLCV KRLVYTNDQG ETVKGVCSNF LCDLAPGSDV
201: KLTGPVGKEM LMPKDPNATV IMLATGTGIA PFRSFLWKMF FEKHDDYKFN GLAWLFLGVP TTSSLLYQEE FDKMKAKAPE NFRVDYAISR EQANDKGEKM
301: YIQTRMAQYA AELWELLKKD NTFVYMCGLK GMEKGIDDIM VSLAANDGID WFDYKKQLKK AEQWNVEVY

Arabidopsis Description

LFNR2Ferredoxin--NADP reductase, leaf isozyme 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8W493]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.