Factsheet for VIT_18s0001g14450.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

cytosol: 21379583

msms PMID: 21379583 doi

RG Sharathchandra, C Stander, D Jacobson, B Ndimba, MA Vivier

Department of Viticulture and Oenology, Institute for Wine Biotechnology, Stellenbosch University, Stellenbosch, South Africa.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_04s0023g03510.t01	Wine grape	plastid	84.85	85.08
GSMUA_Achr11P...	Banana	plastid	83.2	84.36
PGSC0003DMT400009192	Potato	extracellular	83.2	83.43
Solyc02g062130.2.1	Tomato	plastid	82.92	83.15
GSMUA_Achr1P02830_001	Banana	plastid	81.27	81.94
Os06t0107700-01	Rice	plastid	76.31	76.52
Solyc02g083810.2.1	Tomato	plastid	77.96	76.49
EER89050	Sorghum	plastid	74.93	75.35
TraesCS7A01G020500.1	Wheat	plastid	74.66	75.07
TraesCS7D01G016800.1	Wheat	plastid	74.38	74.59
EES04249	Sorghum	plastid	75.48	74.46
Zm00001d045575_P001	Maize	plastid	72.73	74.37
TraesCS4A01G472500.1	Wheat	plastid	74.1	74.31
Zm00001d011833_P001	Maize	plastid	74.1	72.9
TraesCS6D01G012200.1	Wheat	plastid, unclear	72.18	72.58
TraesCS6B01G015000.1	Wheat	plastid	71.9	71.9
Os02t0103800-01	Rice	plastid	72.45	71.86
TraesCS6A01G009200.1	Wheat	plastid	71.63	71.63
GSMUA_Achr8P13460_001	Banana	plastid	82.92	71.33
HORVU7Hr1G002210.8	Barley	plastid	70.25	70.83
HORVU6Hr1G000620.2	Barley	plastid	72.18	65.5
Zm00001d042049_P001	Maize	plastid	73.83	55.03
VIT_10s0003g04880.t01	Wine grape	plastid	44.63	42.97

Protein Annotations

KEGG:00195+1.18.1.2	MapMan:1.1.5.2.1	EntrezGene:100252241	wikigene:100252241	Gene3D:2.40.30.10	Gene3D:3.40.50.80
ProteinID:CBI19880	ProteinID:CBI19880.3	UniProt:E0CQ75	EMBL:FN595227	InterPro:FNR	InterPro:FNR_plant_Cyanobacteria
InterPro:Fd_Rdtase_FAD-bd	InterPro:Flavoprot_Pyr_Nucl_cyt_Rdtase	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824
GO:GO:0004324	GO:GO:0005488	GO:GO:0005575	GO:GO:0005576	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0008266	GO:GO:0009507
GO:GO:0009534	GO:GO:0009535	GO:GO:0009536	GO:GO:0009570	GO:GO:0009579	GO:GO:0009605
GO:GO:0009607	GO:GO:0009719	GO:GO:0009735	GO:GO:0009817	GO:GO:0016020	GO:GO:0016491
GO:GO:0042742	GO:GO:0048046	GO:GO:0055114	InterPro:IPR017927	EntrezGene:LOC100252241	wikigene:LOC100252241
InterPro:OxRdtase_FAD/NAD-bd	PFAM:PF00175	PIRSF:PIRSF000361	PIRSF:PIRSF501178	PRINTS:PR00371	PFscan:PS51384
PANTHER:PTHR43314	PANTHER:PTHR43314:SF5	InterPro:Riboflavin_synthase-like_b-brl	SUPFAM:SSF52343	SUPFAM:SSF63380	UniParc:UPI0001BE1D04
ArrayExpress:VIT_18s0001g14450	EnsemblPlantsGene:VIT_18s0001g14450	EnsemblPlants:VIT_18s0001g14450.t01	unigene:Vvi.11007	RefSeq:XP_002274366	RefSeq:XP_002274366.2
SEG:seg	:	:	:	:	:

Description

Ferredoxin--NADP reductase, chloroplastic [Source:UniProtKB/TrEMBL;Acc:E0CQ75]

Coordinates

chr18:+:12453766..12456583

Molecular Weight (calculated)

40878.4 Da

IEP (calculated)

9.036

GRAVY (calculated)

-0.371

Length

363 amino acids

Sequence
(BLAST)

001: MATAVNAAVS LPSSKSSSLP IRNHIIVSPE RINFNKCFLY SRNVCVGRKV VTIKAQVTTE APAKVEKVSK KNDEGVVVNK FRPKNPYIGK CLLNTKITGD
101: DAPGETWHMV FTTEGEVPYR EGQSIGVIPD GIDKNGKPHK LRLYSIASSA LGDFGDTKTV SLCVKRLVYT NDQGEIVKGV CSNFLCDLKP GADVKITGPV
201: GKEMLMPKDP NATVIMLATG TGIAPFRSFL WKMFFEKYED YKFKGLGWLF LGVPTTSSLL YKDEFEKMKE KAPENFRVDY AVSREQTNEK GEKMYIQTRM
301: AQYAEELWEL LKKDNTYVYM CGLKGMEKGI DDIMVSLAAR DGIDWTEYKR QLKKSEQWNV EVY

Best Arabidopsis Sequence Match ( AT1G20020.1 )
(BLAST)

001: MATTMNAAVS LTSSNSSSFP ATSCAIAPER IRFTKGAFYY KSNNVVTGKR VFSIKAQITT ETDTPTPAKK VEKVSKKNEE GVIVNRYRPK EPYTGKCLLN
101: TKITADDAPG ETWHMVFSHQ GEIPYREGQS VGVIADGIDK NGKPHKVRLY SIASSALGDL GNSETVSLCV KRLVYTNDQG ETVKGVCSNF LCDLAPGSDV
201: KLTGPVGKEM LMPKDPNATV IMLATGTGIA PFRSFLWKMF FEKHDDYKFN GLAWLFLGVP TTSSLLYQEE FDKMKAKAPE NFRVDYAISR EQANDKGEKM
301: YIQTRMAQYA AELWELLKKD NTFVYMCGLK GMEKGIDDIM VSLAANDGID WFDYKKQLKK AEQWNVEVY

Arabidopsis Description

LFNR2Ferredoxin--NADP reductase, leaf isozyme 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8W493]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.