Factsheet for TraesCS4A01G472500.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 22160430
plastid: 22736107
golgi: 25769308

msms PMID: 22736107 doi

AH Kamal, K Cho, DE Kim, N Uozumi, KY Chung, SY Lee, JS Choi, SW Cho, CS Shin, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk 361-763, Korea.

msms PMID: 22160430 doi

AH Kamal, K Cho, S Komatsu, N Uozumi, JS Choi, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G319000.1
TraesCS5B01G560400.1
TraesCS5D01G569800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G20020.1	TraesCS4A01G319000.1	AT4G22890.1	18243102
AT1G20020.1	TraesCS5B01G560400.1	AT4G22890.1	18243102
AT1G20020.1	TraesCS5D01G569800.1	AT4G22890.1	18243102
AT5G66190.1	TraesCS4A01G319000.1	AT4G22890.1	18243102
AT5G66190.1	TraesCS5B01G560400.1	AT4G22890.1	18243102
AT5G66190.1	TraesCS5D01G569800.1	AT4G22890.1	18243102

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7A01G020500.1	Wheat	plastid	92.27	92.52
HORVU7Hr1G002210.8	Barley	plastid	82.32	82.78
Os06t0107700-01	Rice	plastid	81.49	81.49
Zm00001d045575_P001	Maize	plastid	74.03	75.49
EER89050	Sorghum	plastid	74.59	74.79
GSMUA_Achr11P...	Banana	plastid	73.76	74.58
VIT_18s0001g14450.t01	Wine grape	cytosol, plastid	74.31	74.1
VIT_04s0023g03510.t01	Wine grape	plastid	73.76	73.76
KRH28804	Soybean	plastid	73.48	73.48
KRH08061	Soybean	nucleus, plastid	73.2	73.2
TraesCS6A01G009200.1	Wheat	plastid	72.93	72.73
AT5G66190.1	Thale cress	plastid	72.1	72.5
CDY18592	Canola	plastid	72.38	72.38
KRH69775	Soybean	plastid	72.38	72.38
GSMUA_Achr1P02830_001	Banana	plastid	71.82	72.22
PGSC0003DMT400009192	Potato	extracellular	72.1	72.1
Bra012203.1-P	Field mustard	plastid	72.93	71.93
Bra037182.1-P	Field mustard	plastid	72.1	71.9
CDX81408	Canola	plastid	72.1	71.9
Bra016481.1-P	Field mustard	plastid	72.1	71.7
CDY57601	Canola	plastid	72.65	71.66
Solyc02g062130.2.1	Tomato	plastid	71.27	71.27
AT1G20020.1	Thale cress	plastid	71.82	70.46
CDY43420	Canola	plastid	70.17	69.78
CDX83730	Canola	plastid	72.38	69.5
CDY62940	Canola	plastid	70.99	69.27
Solyc02g083810.2.1	Tomato	plastid	67.4	65.95
GSMUA_Achr8P13460_001	Banana	plastid	74.03	63.51
CDY55097	Canola	vacuole	62.98	60.16
CDX83820	Canola	endoplasmic reticulum, plasma membrane	20.72	43.35
TraesCS2A01G252800.1	Wheat	plastid	42.54	40.85
TraesCS5A01G423000.1	Wheat	plastid	40.88	39.36
CDY57760	Canola	plastid	71.27	25.7

Protein Annotations

KEGG:00195+1.18.1.2	MapMan:1.1.5.2.1	Gene3D:2.40.30.10	Gene3D:3.40.50.80	InterPro:FNR	InterPro:FNR_plant_Cyanobacteria
InterPro:Fd_Rdtase_FAD-bd	InterPro:Flavoprot_Pyr_Nucl_cyt_Rdtase	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152
GO:GO:0016491	GO:GO:0055114	InterPro:IPR017927	InterPro:OxRdtase_FAD/NAD-bd	PFAM:PF00175	PIRSF:PIRSF000361
PIRSF:PIRSF501178	PRINTS:PR00371	PFscan:PS51384	PANTHER:PTHR43314	PANTHER:PTHR43314:SF3	InterPro:Riboflavin_synthase-like_b-brl
SUPFAM:SSF52343	SUPFAM:SSF63380	EnsemblPlantsGene:TraesCS4A01G472500	EnsemblPlants:TraesCS4A01G472500.1	TIGR:cd06208	SEG:seg

Description

No Description!

Coordinates

chr4A:-:732771919..732774248

Molecular Weight (calculated)

39918.9 Da

IEP (calculated)

8.423

GRAVY (calculated)

-0.301

Length

362 amino acids

Sequence
(BLAST)

001: MAAVTAAAVS LRAATAATST PSSAPQHSHC SFPCAARTTA VSRRSLSVRA QAVSTDAAAA PVKEKKVSKK QEEGVVTNKF RPKEPYVGKC LLNTKITADD
101: APGETWHMVF STEGEVPYKE GQSIGVVADG EDKNGKPHKL RLYSIASSAL GDFGDAKTVS LCVKRLVYTN DAGEVVKGVC SNFLCDLKPG ADVNITGPVG
201: KEMLMPKDPN ATIIMLATGT GIAPFRSFLW KMFFEKYEYY KFNGLAWLFL GVPTSSSLLY PEEFGKMKAK APDNFRVDYA ISREETNAAG EKMYIQTRMA
301: EYKDELWELL KKDNTYVYMC GLKGMEKGID EIMLPLAAKE GIDWIEYRKQ LKKSEQWNVE VY

Best Arabidopsis Sequence Match ( AT5G66190.1 )
(BLAST)

001: MAAAISAAVS LPSSKSSSLL TKISSVSPQR IFLKKSTVCY RRVVSVKAQV TTDTTEAPPV KVVKESKKQE EGIVVNKFKP KNPYTGRCLL NTKITGDDAP
101: GETWHIVFTT EGEVPYREGQ SIGVIPEGID KNGKPHKLRL YSIASSAIGD FGDSKTVSLC VKRLVYTNDG GEIVKGVCSN FLCDLKPGDE AKITGPVGKE
201: MLMPKDPNAT IIMLGTGTGI APFRSFLWKM FFEEHEDYKF NGLAWLFLGV PTSSSLLYKE EFEKMKEKNP DNFRLDFAVS REQTNEKGEK MYIQTRMAEY
301: AEELWELLKK DNTFVYMCGL KGMEKGIDDI MVSLAAKDGI DWLEYKKQLK RSEQWNVEVY

Arabidopsis Description

LFNR1Ferredoxin--NADP reductase, leaf isozyme 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FKW6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.