Factsheet for TraesCS5A01G423000.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 16595579
plastid: 18419817
golgi: 25769308
unclear: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

msms PMID: 18419817 doi

FM Dupont

Western Regional Research Center, United States Department of Agriculture, Agricultural Research Service, 800 Buchanan Street, Albany, CA 94710K, USA.

msms PMID: 16595579 doi

Y Balmer, WH Vensel, FM DuPont, BB Buchanan, WJ Hurkman

Department of Plant and Microbial Biology, University of California, 111 Koshland Hall, Berkeley, CA 94720, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G431300.1	Wheat	plastid	97.61	97.61
TraesCS5B01G424900.1	Wheat	plastid	94.95	95.71
HORVU5Hr1G103180.1	Barley	plastid	93.09	90.67
Os03t0784700-01	Rice	plastid	85.9	85.45
EER90782	Sorghum	plastid	84.57	83.68
Zm00001d034345_P001	Maize	plastid	84.04	80.61
GSMUA_Achr4P28350_001	Banana	plastid	75.27	75.87
TraesCS2A01G252800.1	Wheat	plastid	75.8	75.6
KRH11782	Soybean	nucleus, plastid	75.8	75.6
VIT_10s0003g04880.t01	Wine grape	plastid	75.0	74.8
KRH36793	Soybean	plastid	74.2	74.01
GSMUA_Achr4P31670_001	Banana	plastid	74.73	73.75
Solyc02g024050.2.1	Tomato	extracellular	73.14	73.53
AT1G30510.2	Thale cress	plastid	74.47	73.3
PGSC0003DMT400010484	Potato	plastid	72.87	73.26
PGSC0003DMT400030830	Potato	extracellular, plastid	72.61	72.99
CDY39167	Canola	plastid	73.14	72.75
Bra029574.1-P	Field mustard	plastid	73.14	72.75
CDY46362	Canola	plastid	73.14	72.75
AT4G05390.1	Thale cress	plastid	72.87	72.49
CDY09570	Canola	plastid	72.87	71.73
CDY02299	Canola	plastid	72.34	71.2
Bra032396.1-P	Field mustard	peroxisome, plastid, vacuole	72.34	65.07
CDY51794	Canola	plastid	40.16	62.4
TraesCS4A01G472500.1	Wheat	plastid	39.36	40.88
TraesCS7A01G020500.1	Wheat	plastid	38.83	40.44
TraesCS6A01G009200.1	Wheat	plastid	38.56	39.94
CDY40011	Canola	cytosol, mitochondrion, peroxisome	22.87	36.6
CDY20886	Canola	mitochondrion, plastid	20.21	35.19

Protein Annotations

KEGG:00195+1.18.1.2	Gene3D:2.40.30.10	Gene3D:3.40.50.80	MapMan:50.1.17	ncoils:Coil	InterPro:FNR
InterPro:FNR_plant_Cyanobacteria	InterPro:Fd_Rdtase_FAD-bd	InterPro:Flavoprot_Pyr_Nucl_cyt_Rdtase	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150
GO:GO:0008152	GO:GO:0016491	GO:GO:0055114	InterPro:IPR017927	InterPro:OxRdtase_FAD/NAD-bd	PFAM:PF00175
PIRSF:PIRSF000361	PIRSF:PIRSF501178	PRINTS:PR00371	PFscan:PS51384	PANTHER:PTHR43314	PANTHER:PTHR43314:SF4
InterPro:Riboflavin_synthase-like_b-brl	SUPFAM:SSF52343	SUPFAM:SSF63380	EnsemblPlantsGene:TraesCS5A01G423000	EnsemblPlants:TraesCS5A01G423000.1	TIGR:cd06208
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr5A:-:608965745..608968828

Molecular Weight (calculated)

41197.8 Da

IEP (calculated)

8.747

GRAVY (calculated)

-0.497

Length

376 amino acids

Sequence
(BLAST)

001: MATAAASQVA FSAPVGGSDR AVRSSGIQGI NSLSFSNKSW IGTALACDSK AAAQSRHLCR AVQQSSKSKV SVAPLDLESA KEPPLNTYKP KGPYTATIVS
101: VERAVGPNAP GETCHVVIDH GGNVPYWEGQ SYGIIPPGEN PKKPGNPQNV RLYSIASTRY GDSFDGKTAS LCVRRAVYYD PETGKEDPSK NGVCSNFLCN
201: SKPGDKIQMT GPSGKIMLLP ESDPNATHIM IATGTGVAPY RGYLRRMFME DVPNFRFGGL AWLFLGVANS DSLLYDEEFT SYLKQYPDNF RFDKALSREQ
301: KNKSGGKMYV QDKIEEYSDE IFKLLDGGAH IYFCGLKGMM PGIQDTLKKV AEQRGESWDQ KLSQLKKNKQ WHVEVY

Best Arabidopsis Sequence Match ( AT4G05390.1 )
(BLAST)

001: MALSTTPSQM SVALPTRIDG SSRSMIKVQS ISFTDKSWGP PLLRLDSKSR SLGVKKRSTI CMSLQQSSKS KVLVTPLELE DPKETPLNLF RPKEPYTATI
101: VSVERIVGPQ APGETCHIVI DHDGNVPYWE GQSYGVIPPG ENPKKPGAPH NVRLYSIAST RYGDSFDGKT ASLCVRRAIY YDPETGKEDP SKAGVCSNFL
201: CNAKPGDKVK ITGPSGKVML LPEDDPKATH IMIATGTGVA PYRGYLRRMF MENVPNFKFD GLAWLFLGVA NSDSLLYDEE FAGYRKDYPE NFRYDKALSR
301: EEKNKKGGKM YVQDKIEEYS DEIFKLLDNG AHIYFCGLKG MMPGIQDTLK RVAEERGESW EQKLTQLRKN KQWHVEVY

Arabidopsis Description

RFNR1Ferredoxin--NADP reductase, root isozyme 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9M0V6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.