CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, peroxisome, cytosol

Predictor Summary:

nucleus 1
peroxisome 1
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, peroxisome
Any Predictor:	cytosol, mitochondrion, nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY20886	Canola	mitochondrion, plastid	68.51	74.54
CDY51794	Canola	plastid	41.28	40.08
TraesCS2B01G272500.1	Wheat	plastid	29.36	31.36
CDY09570	Canola	plastid	44.68	27.49
CDY02299	Canola	plastid	44.26	27.23
GSMUA_Achr4P28350_001	Banana	plastid	41.7	26.27
VIT_10s0003g04880.t01	Wine grape	plastid	41.7	25.99
KRH11782	Soybean	nucleus, plastid	41.7	25.99
KRH36793	Soybean	plastid	41.28	25.73
GSMUA_Achr4P31670_001	Banana	plastid	41.28	25.46
Os07t0147900-01	Rice	plastid	40.85	25.4
CDY46362	Canola	plastid	40.0	24.87
PGSC0003DMT400030830	Potato	extracellular, plastid	39.57	24.87
PGSC0003DMT400010484	Potato	plastid	39.57	24.87
Solyc02g024050.2.1	Tomato	extracellular	39.57	24.87
EER90782	Sorghum	plastid	40.0	24.74
CDY39167	Canola	plastid	39.57	24.6
Zm00001d034345_P001	Maize	plastid	40.85	24.49
OQU88435	Sorghum	plastid	39.57	24.41
TraesCS2A01G252800.1	Wheat	plastid	38.72	24.14
TraesCS2D01G253400.1	Wheat	golgi	38.72	24.07
TraesCS5D01G431300.1	Wheat	plastid	37.45	23.4
TraesCS5B01G424900.1	Wheat	plastid	37.02	23.32
Zm00001d018794_P003	Maize	plastid	39.57	23.02
TraesCS5A01G423000.1	Wheat	plastid	36.6	22.87
Os03t0784700-01	Rice	plastid	36.6	22.75
HORVU5Hr1G103180.1	Barley	plastid	36.17	22.02
HORVU2Hr1G038830.1	Barley	plastid	37.45	20.47
CDY18592	Canola	plastid	28.09	18.23
CDX81408	Canola	plastid	28.09	18.18
CDX83730	Canola	plastid	28.51	17.77
CDY43420	Canola	plastid	27.23	17.58
CDY57601	Canola	plastid	27.23	17.44
CDY62940	Canola	plastid	27.23	17.25
CDY55097	Canola	vacuole	23.83	14.78
CDX83820	Canola	endoplasmic reticulum, plasma membrane	5.53	7.51
CDY57760	Canola	plastid	28.94	6.77
CDY23149	Canola	endoplasmic reticulum, plastid	2.98	4.19

Protein Annotations

Gene3D:2.40.30.10	MapMan:50.1.17	GO:A0A078HQV8	UniProt:A0A078HQV8	EnsemblPlants:CDY40011	ProteinID:CDY40011
ProteinID:CDY40011.1	InterPro:Fd_Rdtase_FAD-bd	InterPro:Flavoprot_Pyr_Nucl_cyt_Rdtase	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150
GO:GO:0008152	GO:GO:0016491	GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00068910001	InterPro:IPR017927	PRINTS:PR00371
PFscan:PS51384	PANTHER:PTHR43314	PANTHER:PTHR43314:SF6	InterPro:Riboflavin_synthase-like_b-brl	SUPFAM:SSF63380	UniParc:UPI0004EE6FCF

Description

BnaC05g13040DBnaC05g13040D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HQV8]

Coordinates

chrLK032462:-:108279..110376

Molecular Weight (calculated)

26140.1 Da

IEP (calculated)

7.769

GRAVY (calculated)

-0.122

Length

235 amino acids

Sequence
(BLAST)

001: MANSTTLKRF STLRLDQMEE TNYVILNELF ALARKSITCE VVVQPHSSFS NTTSNEIELF FLNEFRVAVV SVSIGNERSL TRSVFKSHSF RLCLLDFLIS
101: SEFDLKPSFA CVVSLFILQH NNSISFNTKS CSSSFALTQK TSKPGAPHNV RLYSIASTRY GDFFDGKTVS LCVRRAVYYD PETGKEDPSK NGVCSNFLCD
201: SKPGDKIQIT DPSGKVMLLP ENDPNATHIM IATGT

Best Arabidopsis Sequence Match ( AT1G30510.1 )
(BLAST)

001: MSHSAVSQAG AVSVSIENQR SLRRSVFKNN SISFNSKSWS SSLALNQKTT SIRDGKRYPS TTICMSVQQT SSSKVTVSPI ELEDPKDPPL NLYKPKESYT
101: AKIVSVERVV GPKAPGETCH IVIDHDGNLP YWEGQSYGVI PPGENPKKPG APHNVRLYSI ASTRYGDFFD GKTASLCVRR AVYYDPETGK EDPSKNGVCS
201: NFLCDSKPGD KIQITGPSGK VMLLPESDPN ATHIMIATGT GVAPYRGYLR RMFMENVPNK TFSGLAWLFL GVANTDSLLY DEEFTKYLKD HPDNFRFDKA
301: LSREEKNKKG GKMYVQDKIE EYSDEIFKLL DNGAHIYFCG LKGMMPGIQD TLKRVAEERG ESWDLKLSQL RKNKQWHVEV Y

Arabidopsis Description

RFNR2Ferredoxin--NADP reductase, root isozyme 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9S9P8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.