CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY46362	Canola	plastid	98.41	98.41
Bra029574.1-P	Field mustard	plastid	97.88	97.88
AT4G05390.1	Thale cress	plastid	90.74	90.74
KRH11782	Soybean	nucleus, plastid	78.84	79.05
Solyc02g024050.2.1	Tomato	extracellular	77.25	78.07
KRH36793	Soybean	plastid	77.78	77.98
PGSC0003DMT400010484	Potato	plastid	76.98	77.81
PGSC0003DMT400030830	Potato	extracellular, plastid	76.72	77.54
Os07t0147900-01	Rice	plastid	76.72	76.72
CDY02299	Canola	plastid	76.72	75.92
CDY09570	Canola	plastid	76.72	75.92
GSMUA_Achr4P28350_001	Banana	plastid	74.87	75.87
VIT_10s0003g04880.t01	Wine grape	plastid	75.66	75.86
EER90782	Sorghum	plastid	76.19	75.79
OQU88435	Sorghum	plastid	75.4	74.8
GSMUA_Achr4P31670_001	Banana	plastid	75.13	74.54
TraesCS2A01G252800.1	Wheat	plastid	73.81	74.01
TraesCS2D01G253400.1	Wheat	golgi	73.81	73.81
Zm00001d034345_P001	Maize	plastid	76.19	73.47
Os03t0784700-01	Rice	plastid	73.28	73.28
TraesCS5B01G424900.1	Wheat	plastid	72.22	73.19
TraesCS5D01G431300.1	Wheat	plastid	72.75	73.14
TraesCS5A01G423000.1	Wheat	plastid	72.75	73.14
HORVU5Hr1G103180.1	Barley	plastid	71.43	69.95
Zm00001d018794_P003	Maize	plastid	74.34	69.55
HORVU2Hr1G038830.1	Barley	plastid	74.6	65.58
CDY51794	Canola	plastid	41.01	64.05
TraesCS2B01G272500.1	Wheat	plastid	34.13	58.64
CDY18592	Canola	plastid	43.12	45.03
CDX81408	Canola	plastid	43.12	44.9
CDY57601	Canola	plastid	42.06	43.32
CDY62940	Canola	plastid	41.8	42.59
CDY43420	Canola	plastid	40.48	42.03
CDX83730	Canola	plastid	41.53	41.64
CDY55097	Canola	vacuole	40.21	40.11
CDY40011	Canola	cytosol, mitochondrion, peroxisome	24.6	39.57
CDY20886	Canola	mitochondrion, plastid	21.96	38.43
CDY23149	Canola	endoplasmic reticulum, plastid	12.17	27.54
CDX83820	Canola	endoplasmic reticulum, plasma membrane	11.9	26.01
CDY57760	Canola	plastid	43.39	16.33

Protein Annotations

KEGG:00195+1.18.1.2	Gene3D:2.40.30.10	Gene3D:3.40.50.80	MapMan:50.1.17	GO:A0A078HMR7	UniProt:A0A078HMR7
EnsemblPlants:CDY39167	ProteinID:CDY39167	ProteinID:CDY39167.1	ncoils:Coil	InterPro:FNR	InterPro:FNR_plant_Cyanobacteria
InterPro:Fd_Rdtase_FAD-bd	InterPro:Flavoprot_Pyr_Nucl_cyt_Rdtase	GO:GO:0003674	GO:GO:0003824	GO:GO:0004324	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507
GO:GO:0009536	GO:GO:0016491	GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00067352001	InterPro:IPR017927	InterPro:OxRdtase_FAD/NAD-bd
PFAM:PF00175	PIRSF:PIRSF000361	PIRSF:PIRSF501178	PRINTS:PR00371	PFscan:PS51384	PANTHER:PTHR43314
PANTHER:PTHR43314:SF6	MetaCyc:PWY-101	MetaCyc:PWY-7230	InterPro:Riboflavin_synthase-like_b-brl	SUPFAM:SSF52343	SUPFAM:SSF63380
UniParc:UPI0004EAC0F2	:	:	:	:	:

Description

BnaC09g21770DFerredoxin--NADP reductase [Source:UniProtKB/TrEMBL;Acc:A0A078HMR7]

Coordinates

chrLK032442:+:79278..81234

Molecular Weight (calculated)

42359.8 Da

IEP (calculated)

8.240

GRAVY (calculated)

-0.510

Length

378 amino acids

Sequence
(BLAST)

001: MALSTPLSQM SVALPIGIDG SSGSMIKVQS VSFTEKSCVP LLRLDTVSRK LSLKKRSTVC MSLQQQARRS KVSVTPLELE DPKETPLNLY RPKEPYTAKI
101: VSVDRIVGPQ APGETCHIVI DHDGKVPYWE GQSYGVIPPG ENPKKPGAPH NVRLYSIAST RYGDSFDGKT ASLCVRRAQY YDPETGKEDP SKAGVCSNFL
201: CNAKPGDKVQ ITGPSGKVML LPEEDPKATH IMIATGTGVA PFRGYLRRMF MEDVPTFKFD GLAWLFLGVA NSDSLLYDEE FSSYLKDYPE NFRYDKALSR
301: EEKNKKGGKM YVQDKIEEYS DEIFKLLDDG AHIYFCGLKG MMPGIQDTLK RVAEERGESW EQKLSQLRKN KQWHVEVY

Best Arabidopsis Sequence Match ( AT4G05390.1 )
(BLAST)

001: MALSTTPSQM SVALPTRIDG SSRSMIKVQS ISFTDKSWGP PLLRLDSKSR SLGVKKRSTI CMSLQQSSKS KVLVTPLELE DPKETPLNLF RPKEPYTATI
101: VSVERIVGPQ APGETCHIVI DHDGNVPYWE GQSYGVIPPG ENPKKPGAPH NVRLYSIAST RYGDSFDGKT ASLCVRRAIY YDPETGKEDP SKAGVCSNFL
201: CNAKPGDKVK ITGPSGKVML LPEDDPKATH IMIATGTGVA PYRGYLRRMF MENVPNFKFD GLAWLFLGVA NSDSLLYDEE FAGYRKDYPE NFRYDKALSR
301: EEKNKKGGKM YVQDKIEEYS DEIFKLLDNG AHIYFCGLKG MMPGIQDTLK RVAEERGESW EQKLTQLRKN KQWHVEVY

Arabidopsis Description

RFNR1Ferredoxin--NADP reductase, root isozyme 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9M0V6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.