CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os07t0147900-01	Rice	plastid	85.83	86.51
Zm00001d018794_P003	Maize	plastid	90.55	85.4
TraesCS2A01G252800.1	Wheat	plastid	83.46	84.35
TraesCS2D01G253400.1	Wheat	golgi	83.2	83.86
KRH36793	Soybean	plastid	79.0	79.84
KRH11782	Soybean	nucleus, plastid	79.0	79.84
EER90782	Sorghum	plastid	79.53	79.74
GSMUA_Achr4P28350_001	Banana	plastid	77.95	79.62
VIT_10s0003g04880.t01	Wine grape	plastid	77.69	78.51
GSMUA_Achr4P31670_001	Banana	plastid	77.17	77.17
PGSC0003DMT400010484	Potato	plastid	75.33	76.74
Solyc02g024050.2.1	Tomato	extracellular	75.07	76.47
PGSC0003DMT400030830	Potato	extracellular, plastid	75.07	76.47
CDY46362	Canola	plastid	74.8	75.4
Bra029574.1-P	Field mustard	plastid	74.8	75.4
CDY39167	Canola	plastid	74.8	75.4
CDY09570	Canola	plastid	74.8	74.61
CDY02299	Canola	plastid	74.8	74.61
AT4G05390.1	Thale cress	plastid	74.02	74.6
HORVU2Hr1G038830.1	Barley	plastid	83.99	74.42
AT1G30510.2	Thale cress	plastid	74.54	74.35
TraesCS2B01G272500.1	Wheat	plastid	41.99	72.73
Bra032396.1-P	Field mustard	peroxisome, plastid, vacuole	74.28	67.7
CDY51794	Canola	plastid	39.37	61.98
EES04249	Sorghum	plastid	43.04	44.57
EER89050	Sorghum	plastid	41.99	44.32
CDY40011	Canola	cytosol, mitochondrion, peroxisome	24.41	39.57
CDY20886	Canola	mitochondrion, plastid	22.31	39.35

Protein Annotations

KEGG:00195+1.18.1.2	Gene3D:2.40.30.10	Gene3D:3.40.50.80	MapMan:50.1.17	EntrezGene:8079925	UniProt:C5X9I1
ProteinID:EER97973.1	InterPro:FNR	InterPro:FNR_plant_Cyanobacteria	InterPro:Fd_Rdtase_FAD-bd	InterPro:Flavoprot_Pyr_Nucl_cyt_Rdtase	GO:GO:0003674
GO:GO:0003824	GO:GO:0004324	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009536	GO:GO:0016491	GO:GO:0055114
InterPro:IPR017927	EnsemblPlants:OQU88435	ProteinID:OQU88435	ProteinID:OQU88435.1	InterPro:OxRdtase_FAD/NAD-bd	PFAM:PF00175
PIRSF:PIRSF000361	PIRSF:PIRSF501178	PRINTS:PR00371	PFscan:PS51384	PANTHER:PTHR43314	PANTHER:PTHR43314:SF6
MetaCyc:PWY-101	MetaCyc:PWY-7230	InterPro:Riboflavin_synthase-like_b-brl	EnsemblPlantsGene:SORBI_3002G033400	SUPFAM:SSF52343	SUPFAM:SSF63380
unigene:Sbi.5787	UniParc:UPI0001A840E6	RefSeq:XP_002461452.1	:	:	:

Description

hypothetical protein

Coordinates

chr2:-:3054274..3059395

Molecular Weight (calculated)

42371.6 Da

IEP (calculated)

8.822

GRAVY (calculated)

-0.519

Length

381 amino acids

Sequence
(BLAST)

001: MASPALGSQV AAAASVPVGS DCCFKGTALK GNSNLNFRNK PCIGMALAWK NKTQQSRHLN KVFCMSVQQA SRSKVAVKPI ELENAKEPPL NLYKPKEPYT
101: ATIVSVERIV GPKAPGETCH IVIDHGGNVP YWEGQSYGVI PPGENPKKPG SPNTVRLYSI ASTRYGDSFD GKTTSLCVRR AVYYDPETGE EDPSKKGICS
201: NFLCDSKPGD KVQITGPSGK IMLLPEDDPK ATHIMIATGT GVAPYRGYLR RMFMEDVPTF KFGGLAWLFL GVANSDSLLY DEEFTNYLQQ YPYNFRYDKA
301: LSREQKNKNG GKMYVQDKIE EYSDEIFKLL DGGAHIYFCG LKGMMPGIQD TLKRVAEQRG ESWDQKLSQL KKNKQWHVEV Y

Best Arabidopsis Sequence Match ( AT1G30510.1 )
(BLAST)

001: MSHSAVSQAG AVSVSIENQR SLRRSVFKNN SISFNSKSWS SSLALNQKTT SIRDGKRYPS TTICMSVQQT SSSKVTVSPI ELEDPKDPPL NLYKPKESYT
101: AKIVSVERVV GPKAPGETCH IVIDHDGNLP YWEGQSYGVI PPGENPKKPG APHNVRLYSI ASTRYGDFFD GKTASLCVRR AVYYDPETGK EDPSKNGVCS
201: NFLCDSKPGD KIQITGPSGK VMLLPESDPN ATHIMIATGT GVAPYRGYLR RMFMENVPNK TFSGLAWLFL GVANTDSLLY DEEFTKYLKD HPDNFRFDKA
301: LSREEKNKKG GKMYVQDKIE EYSDEIFKLL DNGAHIYFCG LKGMMPGIQD TLKRVAEERG ESWDLKLSQL RKNKQWHVEV Y

Arabidopsis Description

RFNR2Ferredoxin--NADP reductase, root isozyme 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9S9P8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.