Factsheet for Solyc02g024050.2.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

extracellular: 20496099
extracellular: 26583031
extracellular: 29876421

msms PMID: 20496099 doi

D Dahal, A Pich, HP Braun, K Wydra

Institute for Plant Diseases and Plant Protection, Faculty of Natural Sciences, Leibniz Universität Hannover, Herrenhäuser Str.2, 30419 Hannover, Germany. dahal@ipp.uni-hannover.de

msms PMID: 26583031 doi

F Gawehns, L Ma, O Bruning, PM Houterman, S Boeren, BJ Cornelissen, M Rep, FL Takken

Laboratory of Biochemistry, Wageningen University Wageningen, Netherlands., Molecular Plant Pathology, Faculty of Science, Swammerdam Institute for Life Sciences, University of Amsterdam Amsterdam, Netherlands., RNA Biology and Applied Bioinformatics Research Group and MAD: Dutch Genomics Service and Support Provider, Faculty of Science, Swammerdam Institute for Life Sciences, University of Amsterdam Amsterdam, Netherlands.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400030830	Potato	extracellular, plastid	98.13	98.13
PGSC0003DMT400010484	Potato	plastid	93.32	93.32
KRH11782	Soybean	nucleus, plastid	81.55	80.9
KRH36793	Soybean	plastid	80.21	79.58
VIT_10s0003g04880.t01	Wine grape	plastid	79.14	78.51
AT4G05390.1	Thale cress	plastid	78.61	77.78
Bra029574.1-P	Field mustard	plastid	78.34	77.51
CDY46362	Canola	plastid	78.34	77.51
CDY39167	Canola	plastid	78.07	77.25
Os07t0147900-01	Rice	plastid	78.07	77.25
GSMUA_Achr4P28350_001	Banana	plastid	77.01	77.21
EER90782	Sorghum	plastid	77.27	76.05
AT1G30510.2	Thale cress	plastid	77.27	75.65
GSMUA_Achr4P31670_001	Banana	plastid	77.01	75.59
CDY09570	Canola	plastid	77.01	75.39
OQU88435	Sorghum	plastid	76.47	75.07
CDY02299	Canola	plastid	76.47	74.87
Os03t0784700-01	Rice	plastid	75.4	74.6
TraesCS2A01G252800.1	Wheat	plastid	74.87	74.27
TraesCS2D01G253400.1	Wheat	golgi	74.87	74.07
Zm00001d034345_P001	Maize	plastid	76.74	73.21
TraesCS5A01G423000.1	Wheat	plastid	73.53	73.14
TraesCS5B01G424900.1	Wheat	plastid	72.46	72.65
TraesCS5D01G431300.1	Wheat	plastid	72.99	72.61
HORVU5Hr1G103180.1	Barley	plastid	72.99	70.73
Zm00001d018794_P003	Maize	plastid	75.13	69.55
Bra032396.1-P	Field mustard	peroxisome, plastid, vacuole	76.2	68.18
HORVU2Hr1G038830.1	Barley	plastid	75.94	66.05
CDY51794	Canola	plastid	41.44	64.05
TraesCS2B01G272500.1	Wheat	plastid	35.03	59.55
Solyc02g062130.2.1	Tomato	plastid	42.78	44.2
CDY20886	Canola	mitochondrion, plastid	24.06	41.67
Solyc02g083810.2.1	Tomato	plastid	39.84	40.27
CDY40011	Canola	cytosol, mitochondrion, peroxisome	24.87	39.57

Protein Annotations

KEGG:00195+1.18.1.2	Gene3D:2.40.30.10	Gene3D:3.40.50.80	MapMan:50.1.17	ncoils:Coil	InterPro:FNR
InterPro:FNR_plant_Cyanobacteria	InterPro:Fd_Rdtase_FAD-bd	InterPro:Flavoprot_Pyr_Nucl_cyt_Rdtase	GO:GO:0003674	GO:GO:0003824	GO:GO:0004324
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008152
GO:GO:0009507	GO:GO:0009536	GO:GO:0016491	GO:GO:0055114	InterPro:IPR017927	UniProt:K4B553
InterPro:OxRdtase_FAD/NAD-bd	PFAM:PF00175	PIRSF:PIRSF000361	PIRSF:PIRSF501178	PRINTS:PR00371	PFscan:PS51384
PANTHER:PTHR43314	PANTHER:PTHR43314:SF6	InterPro:Riboflavin_synthase-like_b-brl	SUPFAM:SSF52343	SUPFAM:SSF63380	EnsemblPlantsGene:Solyc02g024050.2
EnsemblPlants:Solyc02g024050.2.1	UniParc:UPI0002768BC3	:	:	:	:

Description

Ferredoxin--NADP reductase [Source:UniProtKB/TrEMBL;Acc:K4B553]

Coordinates

chr2:+:24860673..24866452

Molecular Weight (calculated)

41725.7 Da

IEP (calculated)

8.741

GRAVY (calculated)

-0.496

Length

374 amino acids

Sequence
(BLAST)

001: MAHSAISQVS VAVPLQTDSS FRRSTFKATS LTFSDKSCIS MPSIDLKATR SRSQYIVCMS VQHASKAKVS VSPLSLENAT EPPLNIYKPK EPYTATIVSV
101: ERIVGPKAPG ETCHIVIDHD GNLPYWEGQS YGVVPPGENP KKPGSPHNVR LYSIASTRYG DSFDGKTASL CVRRAVYYDP ETGKEDPSKN GVCSNFLCNA
201: KPGDKVKITG PSGKIMLLPE NNPNATHIMI GTGTGVAPFR GYLRRMFMES VPMKFNGLAW LFLGVANTDS LLYDDEFTKY LNDYPGNFRY DRALSREQKN
301: NKGGKMYVQD KIEEYSDEIF KLLDEGAHIY FCGLKGMMPG IQDTLKRVAE ERGESWEQKL SQLKKNKQWH VEVY

Best Arabidopsis Sequence Match ( AT1G30510.1 )
(BLAST)

001: MSHSAVSQAG AVSVSIENQR SLRRSVFKNN SISFNSKSWS SSLALNQKTT SIRDGKRYPS TTICMSVQQT SSSKVTVSPI ELEDPKDPPL NLYKPKESYT
101: AKIVSVERVV GPKAPGETCH IVIDHDGNLP YWEGQSYGVI PPGENPKKPG APHNVRLYSI ASTRYGDFFD GKTASLCVRR AVYYDPETGK EDPSKNGVCS
201: NFLCDSKPGD KIQITGPSGK VMLLPESDPN ATHIMIATGT GVAPYRGYLR RMFMENVPNK TFSGLAWLFL GVANTDSLLY DEEFTKYLKD HPDNFRFDKA
301: LSREEKNKKG GKMYVQDKIE EYSDEIFKLL DNGAHIYFCG LKGMMPGIQD TLKRVAEERG ESWDLKLSQL RKNKQWHVEV Y

Arabidopsis Description

RFNR2Ferredoxin--NADP reductase, root isozyme 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9S9P8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.