Factsheet for Solyc02g083810.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

plastid: 20363867
plastid: 22908117
nucleus: 25464976
plastid: 28183294
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 28183294 doi

R Tamburino, M Vitale, A Ruggiero, M Sassi, L Sannino, S Arena, A Costa, G Batelli, N Zambrano, A Scaloni, S Grillo, N Scotti

Center of Genetics Engineering (CEINGE) Biotecnologie Avanzate S.c. a R.l, via Pansini, 80100, Napoli, Italy., Department of Molecular Medicine and Medical Biotechnology, University of Naples Federico II, via Pansini, 80100, Napoli, Italy., Institute for the Animal Production System in the Mediterranean Environment, National Research Council of Italy (CNR-ISPAAM), via Argine 1085, 80147, Napoli, Italy., Institute of Biosciences and BioResources, National Research Council of Italy (CNR-IBBR), via Università 133, 80055, Portici, NA, Italy., Institute of Biosciences and BioResources, National Research Council of Italy (CNR-IBBR), via Università 133, 80055, Portici, NA, Italy. nscotti@unina.it.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc08g007770.2.1
Solyc08g080050.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G66190.1	Solyc08g007770.2.1	AT4G22890.1	18243102
AT5G66190.1	Solyc08g080050.2.1	AT4G22890.1	18243102

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400009192	Potato	extracellular	91.35	93.37
KRH28804	Soybean	plastid	81.35	83.15
VIT_04s0023g03510.t01	Wine grape	plastid	80.81	82.6
Solyc02g062130.2.1	Tomato	plastid	79.73	81.49
KRH69775	Soybean	plastid	78.11	79.83
KRH08061	Soybean	nucleus, plastid	78.11	79.83
VIT_18s0001g14450.t01	Wine grape	cytosol, plastid	76.49	77.96
GSMUA_Achr11P...	Banana	plastid	73.24	75.7
GSMUA_Achr1P02830_001	Banana	plastid	73.51	75.56
AT5G66190.1	Thale cress	plastid	73.24	75.28
CDY18592	Canola	plastid	72.97	74.59
Bra037182.1-P	Field mustard	plastid	72.97	74.38
CDX81408	Canola	plastid	72.97	74.38
Zm00001d045575_P001	Maize	plastid	67.84	70.7
Os06t0107700-01	Rice	plastid	68.92	70.44
TraesCS7D01G016800.1	Wheat	plastid	68.38	69.89
EER89050	Sorghum	plastid	68.11	69.81
TraesCS6B01G015000.1	Wheat	plastid	68.11	69.42
EES04249	Sorghum	plastid	68.92	69.29
TraesCS6D01G012200.1	Wheat	plastid, unclear	67.3	68.98
TraesCS7A01G020500.1	Wheat	plastid	66.76	68.42
TraesCS6A01G009200.1	Wheat	plastid	67.03	68.32
Zm00001d011833_P001	Maize	plastid	67.3	67.48
TraesCS4A01G472500.1	Wheat	plastid	65.95	67.4
Os02t0103800-01	Rice	plastid	65.14	65.85
CDY55097	Canola	vacuole	67.03	65.44
GSMUA_Achr8P13460_001	Banana	plastid	74.05	64.93
HORVU7Hr1G002210.8	Barley	plastid	62.97	64.72
HORVU6Hr1G000620.2	Barley	plastid	66.76	61.75
Zm00001d042049_P001	Maize	plastid	68.92	52.36
CDX83820	Canola	endoplasmic reticulum, plasma membrane	20.54	43.93
Solyc02g024050.2.1	Tomato	extracellular	40.27	39.84
CDY57760	Canola	plastid	71.89	26.49

Protein Annotations

KEGG:00195+1.18.1.2	MapMan:1.1.5.2.1	Gene3D:2.40.30.10	Gene3D:3.40.50.80	InterPro:FNR	InterPro:FNR_plant_Cyanobacteria
InterPro:Fd_Rdtase_FAD-bd	InterPro:Flavoprot_Pyr_Nucl_cyt_Rdtase	GO:GO:0003674	GO:GO:0003824	GO:GO:0004324	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507
GO:GO:0009536	GO:GO:0016491	GO:GO:0055114	InterPro:IPR017927	UniProt:K4BAP9	InterPro:OxRdtase_FAD/NAD-bd
PFAM:PF00175	PIRSF:PIRSF000361	PIRSF:PIRSF501178	PRINTS:PR00371	PFscan:PS51384	PANTHER:PTHR43314
PANTHER:PTHR43314:SF7	InterPro:Riboflavin_synthase-like_b-brl	SUPFAM:SSF52343	SUPFAM:SSF63380	EnsemblPlantsGene:Solyc02g083810.2	EnsemblPlants:Solyc02g083810.2.1
UniParc:UPI0002768886	SEG:seg	:	:	:	:

Description

Ferredoxin--NADP reductase [Source:UniProtKB/TrEMBL;Acc:K4BAP9]

Coordinates

chr2:-:47068869..47072154

Molecular Weight (calculated)

41606.0 Da

IEP (calculated)

9.097

GRAVY (calculated)

-0.392

Length

370 amino acids

Sequence
(BLAST)

001: MATAVSAAVS LPSSKSTSFS SRNSIISTDK INFNKVPLYY RNVSGASRLV SIRAQVTTEA PAKVEKISKK QEEGVIVNKF RPKEPYVGRC LLNTKITGDD
101: APGETWHMVF STEGEVPYRE GQSIGVIADG VDANGKPHKL RLYSIASSAL GDFGDSKTHM FPCVSRGLCT PMTKGKKLKE FAQTSYVYPF YFSDLKPGAE
201: VKITGPVGKE MLMPKDPNAT VIMLATGTGI APFRSFLWKM FFEKHEDYKF NGTAWLFLGV PTSSSLLYKE EFEKMKEKAP ENFRLDFAVS REQTNEKGEK
301: MYIQTRMAQY AEELWTLLQK DNTFIYMCGL KGMEQGIDEI MSSLAERDGI VWADYKKQLK KAEQWNVEVY

Best Arabidopsis Sequence Match ( AT1G20020.1 )
(BLAST)

001: MATTMNAAVS LTSSNSSSFP ATSCAIAPER IRFTKGAFYY KSNNVVTGKR VFSIKAQITT ETDTPTPAKK VEKVSKKNEE GVIVNRYRPK EPYTGKCLLN
101: TKITADDAPG ETWHMVFSHQ GEIPYREGQS VGVIADGIDK NGKPHKVRLY SIASSALGDL GNSETVSLCV KRLVYTNDQG ETVKGVCSNF LCDLAPGSDV
201: KLTGPVGKEM LMPKDPNATV IMLATGTGIA PFRSFLWKMF FEKHDDYKFN GLAWLFLGVP TTSSLLYQEE FDKMKAKAPE NFRVDYAISR EQANDKGEKM
301: YIQTRMAQYA AELWELLKKD NTFVYMCGLK GMEKGIDDIM VSLAANDGID WFDYKKQLKK AEQWNVEVY

Arabidopsis Description

LFNR2Ferredoxin--NADP reductase, leaf isozyme 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8W493]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.