Factsheet for TraesCS6B01G015000.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G319000.1
TraesCS5B01G560400.1
TraesCS5D01G569800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G20020.1	TraesCS4A01G319000.1	AT4G22890.1	18243102
AT1G20020.1	TraesCS5B01G560400.1	AT4G22890.1	18243102
AT1G20020.1	TraesCS5D01G569800.1	AT4G22890.1	18243102
AT5G66190.1	TraesCS4A01G319000.1	AT4G22890.1	18243102
AT5G66190.1	TraesCS5B01G560400.1	AT4G22890.1	18243102
AT5G66190.1	TraesCS5D01G569800.1	AT4G22890.1	18243102

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G009200.1	Wheat	plastid	92.84	92.84
TraesCS6D01G012200.1	Wheat	plastid, unclear	91.18	91.69
EES04249	Sorghum	plastid	80.17	79.08
VIT_04s0023g03510.t01	Wine grape	plastid	76.03	76.24
Zm00001d011833_P001	Maize	plastid	77.14	75.88
Os02t0103800-01	Rice	plastid	76.31	75.68
PGSC0003DMT400009192	Potato	extracellular	74.93	75.14
KRH69775	Soybean	plastid	74.93	75.14
KRH28804	Soybean	plastid	74.66	74.86
KRH08061	Soybean	nucleus, plastid	74.66	74.86
HORVU6Hr1G000620.2	Barley	plastid	82.37	74.75
Solyc02g062130.2.1	Tomato	plastid	74.38	74.59
AT5G66190.1	Thale cress	plastid	73.83	74.44
GSMUA_Achr11P...	Banana	plastid	73.28	74.3
CDY18592	Canola	plastid	73.55	73.76
Bra037182.1-P	Field mustard	plastid	73.55	73.55
GSMUA_Achr1P02830_001	Banana	plastid	72.45	73.06
CDX81408	Canola	plastid	73.0	73.0
VIT_18s0001g14450.t01	Wine grape	cytosol, plastid	71.9	71.9
Bra016481.1-P	Field mustard	plastid	69.42	69.23
CDY57601	Canola	plastid	69.97	69.21
Bra012203.1-P	Field mustard	plastid	69.97	69.21
Solyc02g083810.2.1	Tomato	plastid	69.42	68.11
AT1G20020.1	Thale cress	plastid	68.87	67.75
CDY43420	Canola	plastid	67.77	67.58
CDY62940	Canola	plastid	68.87	67.39
CDX83730	Canola	plastid	69.15	66.58
GSMUA_Achr8P13460_001	Banana	plastid	73.28	63.03
CDY55097	Canola	vacuole	65.29	62.53
Zm00001d042049_P001	Maize	plastid	80.99	60.37
CDX83820	Canola	endoplasmic reticulum, plasma membrane	21.21	44.51
TraesCS5B01G424900.1	Wheat	plastid	40.77	39.68
TraesCS2B01G272500.1	Wheat	plastid	19.01	31.36
CDY57760	Canola	plastid	71.9	26.0

Protein Annotations

KEGG:00195+1.18.1.2	MapMan:1.1.5.2.1	Gene3D:2.40.30.10	Gene3D:3.40.50.80	InterPro:FNR	InterPro:FNR_plant_Cyanobacteria
InterPro:Fd_Rdtase_FAD-bd	InterPro:Flavoprot_Pyr_Nucl_cyt_Rdtase	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008152	GO:GO:0009536	GO:GO:0009579
GO:GO:0016020	GO:GO:0016491	GO:GO:0055114	GO:GO:0098807	InterPro:IPR017927	InterPro:OxRdtase_FAD-bd_dom
InterPro:OxRdtase_FAD/NAD-bd	PFAM:PF00175	PFAM:PF00970	PIRSF:PIRSF000361	PIRSF:PIRSF501178	PRINTS:PR00371
PFscan:PS51384	PANTHER:PTHR43314	PANTHER:PTHR43314:SF3	InterPro:Riboflavin_synthase-like_b-brl	SUPFAM:SSF52343	SUPFAM:SSF63380
EnsemblPlantsGene:TraesCS6B01G015000	EnsemblPlants:TraesCS6B01G015000.1	TIGR:cd06208	SEG:seg	:	:

Description

No Description!

Coordinates

chr6B:+:9001879..9003659

Molecular Weight (calculated)

40154.0 Da

IEP (calculated)

6.532

GRAVY (calculated)

-0.375

Length

363 amino acids

Sequence
(BLAST)

001: MAAQLTAALP SYSPAATKAA GGSSASCTAS HFLAYPTRRL RNGVRAQVST TEPTAEPAPA APAKPAKISK KQDEGVVTNK YRPKEPYVGR CLLNTRLTGD
101: NAPGETWHMV FSTEGEVPYR EGQSIGVIAD GEDKNGKPHK LRLYSIASSA LGDFGDSKTV SLCVKRLVYT NDAGEVVKGV CSNFLCDLKP GSEVKITGPV
201: GKEMLMPKDP NATIIMLATG TGIAPFRSFL WKMFFEEHED YKFNGLAWLF LGVPTSDTLL YKEEFEKMVE IGGENFRLDF AVSREQTNAA GEKMYIQTRM
301: AEYKEELWEL LKKDNTYVYM CGLKGMEKGI DDIMVDLAAK DGIDWIDYKK QLKKAEQWNV EVY

Best Arabidopsis Sequence Match ( AT5G66190.1 )
(BLAST)

001: MAAAISAAVS LPSSKSSSLL TKISSVSPQR IFLKKSTVCY RRVVSVKAQV TTDTTEAPPV KVVKESKKQE EGIVVNKFKP KNPYTGRCLL NTKITGDDAP
101: GETWHIVFTT EGEVPYREGQ SIGVIPEGID KNGKPHKLRL YSIASSAIGD FGDSKTVSLC VKRLVYTNDG GEIVKGVCSN FLCDLKPGDE AKITGPVGKE
201: MLMPKDPNAT IIMLGTGTGI APFRSFLWKM FFEEHEDYKF NGLAWLFLGV PTSSSLLYKE EFEKMKEKNP DNFRLDFAVS REQTNEKGEK MYIQTRMAEY
301: AEELWELLKK DNTFVYMCGL KGMEKGIDDI MVSLAAKDGI DWLEYKKQLK RSEQWNVEVY

Arabidopsis Description

LFNR1Ferredoxin--NADP reductase, leaf isozyme 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FKW6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.