CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

plastid: 20443193
nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 20443193 doi

N Ahsan, Y Nanjo, H Sawada, Y Kohno, S Komatsu

National Institute of Crop Science, Tsukuba, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH04003
KRH26378
KRH57278
KRH77457

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G66190.1	KRH04003	AT4G22890.1	18243102
AT5G66190.1	KRH26378	AT4G22890.1	18243102
AT5G66190.1	KRH57278	AT4G22890.1	18243102
AT5G66190.1	KRH77457	AT4G22890.1	18243102

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH08061	Soybean	nucleus, plastid	97.24	97.24
KRH28804	Soybean	plastid	92.82	92.82
VIT_04s0023g03510.t01	Wine grape	plastid	88.67	88.67
Solyc02g062130.2.1	Tomato	plastid	85.08	85.08
PGSC0003DMT400009192	Potato	extracellular	85.08	85.08
AT5G66190.1	Thale cress	plastid	83.98	84.44
GSMUA_Achr1P02830_001	Banana	plastid	83.98	84.44
GSMUA_Achr11P...	Banana	plastid	83.43	84.36
KRH76652	Soybean	cytosol, peroxisome, plastid	18.51	83.75
CDX81408	Canola	plastid	83.7	83.47
CDY18592	Canola	plastid	83.43	83.43
Bra037182.1-P	Field mustard	plastid	83.43	83.2
Solyc02g083810.2.1	Tomato	plastid	79.83	78.11
Zm00001d045575_P001	Maize	plastid	75.41	76.9
EER89050	Sorghum	plastid	75.97	76.18
EES04249	Sorghum	plastid	76.8	75.54
Os06t0107700-01	Rice	plastid	75.41	75.41
TraesCS6B01G015000.1	Wheat	plastid	75.14	74.93
TraesCS6D01G012200.1	Wheat	plastid, unclear	74.31	74.52
TraesCS6A01G009200.1	Wheat	plastid	74.59	74.38
Zm00001d011833_P001	Maize	plastid	75.14	73.71
TraesCS7D01G016800.1	Wheat	plastid	73.48	73.48
Os02t0103800-01	Rice	plastid	73.76	72.95
TraesCS7A01G020500.1	Wheat	plastid	72.65	72.85
TraesCS4A01G472500.1	Wheat	plastid	72.38	72.38
GSMUA_Achr8P13460_001	Banana	plastid	82.6	70.85
HORVU7Hr1G002210.8	Barley	plastid	69.34	69.72
CDY55097	Canola	vacuole	71.27	68.07
HORVU6Hr1G000620.2	Barley	plastid	73.76	66.75
Zm00001d042049_P001	Maize	plastid	74.86	55.65
CDX83820	Canola	endoplasmic reticulum, plasma membrane	22.38	46.82
KRH36793	Soybean	plastid	45.3	43.5
KRH11782	Soybean	nucleus, plastid	45.3	43.5
CDY57760	Canola	plastid	81.77	29.48

Protein Annotations

KEGG:00195+1.18.1.2	MapMan:1.1.5.2.1	EntrezGene:100798467	Gene3D:2.40.30.10	Gene3D:3.40.50.80	EMBL:ACUP02000729
InterPro:FNR	InterPro:FNR_plant_Cyanobacteria	InterPro:Fd_Rdtase_FAD-bd	InterPro:Flavoprot_Pyr_Nucl_cyt_Rdtase	EnsemblPlantsGene:GLYMA_02G047600	GO:GO:0003674
GO:GO:0003824	GO:GO:0004324	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009536	GO:GO:0016491	GO:GO:0055114
UniProt:I1JCG8	InterPro:IPR017927	EnsemblPlants:KRH69775	ProteinID:KRH69775	ProteinID:KRH69775.1	InterPro:OxRdtase_FAD/NAD-bd
PFAM:PF00175	PIRSF:PIRSF000361	PIRSF:PIRSF501178	PRINTS:PR00371	PFscan:PS51384	PANTHER:PTHR43314
PANTHER:PTHR43314:SF7	MetaCyc:PWY-101	InterPro:Riboflavin_synthase-like_b-brl	SUPFAM:SSF52343	SUPFAM:SSF63380	UniParc:UPI0000F35DB5
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:-:4376285..4379912

Molecular Weight (calculated)

40441.6 Da

IEP (calculated)

8.419

GRAVY (calculated)

-0.371

Length

362 amino acids

Sequence
(BLAST)

001: MAAAVSAAVS FPSTKSTSLP SRTSLIAPER VVFKKASLQN RDVSSSGRVV SIRAQVTTEA PAKVEKESKK QDEGVVVNKF KPKTPYIGRC LLNTKITGDD
101: APGETWHMVF STEGEIPYRE GQSIGVIPDG IDKNGKPHKL RLYSIASSAI GDFGDSKTVS LCVKRLVYTN ENGEIVKGVC SNFLCDLKPG AEVTITGPVG
201: KEMLMPKDPN ATIIMLGTGT GIAPFRSFLW KMFFEKHEDY KFNGLAWLFL GVPTSSSLLY KEEFEKMQEK SPENFRLDFA VSREQTNEKG EKMYIQTRMA
301: QYAEELWELL KKDNTFVYMC GLKGMEKGID DIMVSLAAKD GIDWTEYKRQ LKKAEQWNVE VY

Best Arabidopsis Sequence Match ( AT5G66190.1 )
(BLAST)

001: MAAAISAAVS LPSSKSSSLL TKISSVSPQR IFLKKSTVCY RRVVSVKAQV TTDTTEAPPV KVVKESKKQE EGIVVNKFKP KNPYTGRCLL NTKITGDDAP
101: GETWHIVFTT EGEVPYREGQ SIGVIPEGID KNGKPHKLRL YSIASSAIGD FGDSKTVSLC VKRLVYTNDG GEIVKGVCSN FLCDLKPGDE AKITGPVGKE
201: MLMPKDPNAT IIMLGTGTGI APFRSFLWKM FFEEHEDYKF NGLAWLFLGV PTSSSLLYKE EFEKMKEKNP DNFRLDFAVS REQTNEKGEK MYIQTRMAEY
301: AEELWELLKK DNTFVYMCGL KGMEKGIDDI MVSLAAKDGI DWLEYKKQLK RSEQWNVEVY

Arabidopsis Description

LFNR1Ferredoxin--NADP reductase, leaf isozyme 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FKW6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.