Factsheet for Os06t0107700-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid, secretory
BaCelLo:	secretory
EpiLoc:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Plant-mPloc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 21734114

golgi: 15069638
nucleus: 19621931
plastid: 21433289
extracellular: 23159799
plasma membrane: 27800704
extracellular: 28232208

gfp PMID: 21734114 doi

M Higuchi-Takeuchi, T Ichikawa, Y Kondou, K Matsui, Y Hasegawa, M Kawashima, K Sonoike, M Mori, H Hirochika, M Matsui

Plant Functional Genomics Research Group, RIKEN, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan.

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 15069638 doi

N Tanaka, M Fujita, H Handa, S Murayama, M Uemura, Y Kawamura, T Mitsui, S Mikami, Y Tozawa, T Yoshinaga, S Komatsu

Department of Molecular Genetics, National Institute of Agrobiological Sciences, 305-8602, Tsukuba, Japan.

msms PMID: 23159799 doi

SG Kim, Y Wang, KH Lee, ZY Park, J Park, J Wu, SJ Kwon, YH Lee, GK Agrawal, R Rakwal, ST Kim, KY Kang

Plant Molecular Biology and Biotechnology Research Center, Gyeongsang National University, Jinju, 660-701, South Korea.

msms PMID: 21433289 doi

S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky

Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.

msms PMID: 19621931 doi

T Aki, S Yanagisawa

Department of Applied Biological Chemistry, The University of Tokyo, Japan.

msms PMID: 28232208 doi

Y Wang, R Gupta, W Song, HH Huh, SE Lee, J Wu, GK Agrawal, R Rakwal, KY Kang, SR Park, ST Kim

Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea., Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea. Electronic address: stkim71@pusan.ac.kr., Department of Plant Microbe Interactions, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Division of Applied Life Science (BK21 Program), Gyeongsang National University, Jinju, South Korea., National Academy of Agricultural Science, Rural Development Administration, Suwon 441-707, South Korea. Electronic address: srpark@korea.kr., Plant Proteomics Group, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal; Faculty of Health and Sport Sciences, Tsukuba International Academy for Sport Studies (TIAS), University of Tsukuba, 1-1-1 Tennodai, Tsukuba, 305-8574, Ibaraki, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os03t0857400-01
Os08t0310500-00
Os08t0526300-02

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G20020.1	Os03t0857400-01	AT4G22890.1	18243102
AT1G20020.1	Os08t0310500-00	AT4G22890.1	18243102
AT1G20020.1	Os08t0526300-02	AT4G22890.1	18243102
AT5G66190.1	Os03t0857400-01	AT4G22890.1	18243102
AT5G66190.1	Os08t0310500-00	AT4G22890.1	18243102
AT5G66190.1	Os08t0526300-02	AT4G22890.1	18243102

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G472500.1	Wheat	plastid	81.49	81.49
EER89050	Sorghum	plastid	80.66	80.89
Zm00001d045575_P001	Maize	plastid	78.45	80.0
TraesCS7D01G016800.1	Wheat	plastid	79.83	79.83
TraesCS7A01G020500.1	Wheat	plastid	78.73	78.95
GSMUA_Achr11P...	Banana	plastid	77.07	77.93
VIT_04s0023g03510.t01	Wine grape	plastid	76.8	76.8
VIT_18s0001g14450.t01	Wine grape	cytosol, plastid	76.52	76.31
GSMUA_Achr1P02830_001	Banana	plastid	75.69	76.11
KRH28804	Soybean	plastid	75.97	75.97
KRH08061	Soybean	nucleus, plastid	75.69	75.69
KRH69775	Soybean	plastid	75.41	75.41
PGSC0003DMT400009192	Potato	extracellular	75.41	75.41
Solyc02g062130.2.1	Tomato	plastid	74.59	74.59
Os02t0103800-01	Rice	plastid	75.14	74.32
CDY57601	Canola	plastid	74.86	73.84
HORVU7Hr1G002210.8	Barley	plastid	73.2	73.61
Bra012203.1-P	Field mustard	plastid	74.59	73.57
AT1G20020.1	Thale cress	plastid	74.86	73.44
Bra016481.1-P	Field mustard	plastid	73.76	73.35
CDY18592	Canola	plastid	73.2	73.2
AT5G66190.1	Thale cress	plastid	72.65	73.06
CDX81408	Canola	plastid	73.2	73.0
Bra037182.1-P	Field mustard	plastid	72.93	72.73
CDY43420	Canola	plastid	72.65	72.25
CDX83730	Canola	plastid	74.03	71.09
CDY62940	Canola	plastid	72.38	70.62
Solyc02g083810.2.1	Tomato	plastid	70.44	68.92
GSMUA_Achr8P13460_001	Banana	plastid	75.69	64.93
CDY55097	Canola	vacuole	63.81	60.95
CDX83820	Canola	endoplasmic reticulum, plasma membrane	20.99	43.93
Os07t0147900-01	Rice	plastid	42.54	40.74
Os03t0784700-01	Rice	plastid	41.16	39.42
CDY57760	Canola	plastid	71.82	25.9
Os02t0103600-01	Rice	plasma membrane	11.88	12.18

Protein Annotations

KEGG:00195+1.18.1.2	MapMan:1.1.5.2.1	Gene3D:2.40.30.10	Gene3D:3.40.50.80	EntrezGene:4339874	EMBL:AK065063
ProteinID:BAA85425.1	ProteinID:BAA90642.1	ProteinID:BAF18484.1	ProteinID:BAS95764.1	EMBL:D17790	ProteinID:EAZ35558.1
InterPro:FNR	InterPro:FNR_plant_Cyanobacteria	InterPro:Fd_Rdtase_FAD-bd	InterPro:Flavoprot_Pyr_Nucl_cyt_Rdtase	GO:GO:0003674	GO:GO:0003824
GO:GO:0004324	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009535	GO:GO:0009536
GO:GO:0009570	GO:GO:0009579	GO:GO:0009987	GO:GO:0015979	GO:GO:0016020	GO:GO:0016491
GO:GO:0055114	GO:GO:0098807	InterPro:IPR017927	EnsemblPlantsGene:Os06g0107700	EnsemblPlants:Os06t0107700-01	InterPro:OxRdtase_FAD-bd_dom
InterPro:OxRdtase_FAD/NAD-bd	UniProt:P41344	PFAM:PF00175	PFAM:PF00970	PIRSF:PIRSF000361	PIRSF:PIRSF501178
PRINTS:PR00371	PFscan:PS51384	PANTHER:PTHR43314	PANTHER:PTHR43314:SF3	InterPro:Riboflavin_synthase-like_b-brl	SUPFAM:SSF52343
SUPFAM:SSF63380	UniParc:UPI0000001113	RefSeq:XP_015640980.1	SEG:seg	:	:

Description

leaf-type ferredoxin-NADP+-oxidoreductase 2, leaf-type FNR 2, Fd NADP+ oxidoreductase 2, LeafFerredoxin-NADP+ Reductase, leaf FNRLeaf-type ferredoxin-NADP+-oxidoreductase, Regulation of electron partitioning in the chloroplast (Os06t0107700-01)

Coordinates

chr6:-:479261..481572

Molecular Weight (calculated)

40010.1 Da

IEP (calculated)

8.748

GRAVY (calculated)

-0.340

Length

362 amino acids

Sequence
(BLAST)

001: MAAVTAAAVS TSAAAAVTKA SPSPAHCFLP CPPRTRAAHQ RGLLLRAQVS TTDAAAVAAA PAKKEKISKK HDEGVVTNKY RPKEPYVGKC LLNTKITADD
101: APGETWHMVF STEGEIPYRE GQSIGVIADG VDKNGKPHKL RLYSIASSAL GDFGDSKTVS LCVKRLVYTN DQGEIVKGVC SNFLCDLKPG SDVKITGPVG
201: KEMLMPKDPN ANIIMLATGT GIAPFRSFLW KMFFEKYDDY KFNGLAWLFL GVPTSSSLLY KEEFDKMKAK APENFRVDYA VSREQTNAQG EKMYIQTRMA
301: EYKEELWELL KKDHTYVYMC GLKGMEKGID DIMVSLAAKD GIDWADYKKQ LKKGEQWNVE VY

Best Arabidopsis Sequence Match ( AT1G20020.1 )
(BLAST)

001: MATTMNAAVS LTSSNSSSFP ATSCAIAPER IRFTKGAFYY KSNNVVTGKR VFSIKAQITT ETDTPTPAKK VEKVSKKNEE GVIVNRYRPK EPYTGKCLLN
101: TKITADDAPG ETWHMVFSHQ GEIPYREGQS VGVIADGIDK NGKPHKVRLY SIASSALGDL GNSETVSLCV KRLVYTNDQG ETVKGVCSNF LCDLAPGSDV
201: KLTGPVGKEM LMPKDPNATV IMLATGTGIA PFRSFLWKMF FEKHDDYKFN GLAWLFLGVP TTSSLLYQEE FDKMKAKAPE NFRVDYAISR EQANDKGEKM
301: YIQTRMAQYA AELWELLKKD NTFVYMCGLK GMEKGIDDIM VSLAANDGID WFDYKKQLKK AEQWNVEVY

Arabidopsis Description

LFNR2Ferredoxin--NADP reductase, leaf isozyme 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8W493]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.