Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 8
- cytosol 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| plasma membrane:
27800704
|
msms PMID:
27800704
doi
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| CAA33977 | |
| Os02t0103800-01 | |
| Os06t0107700-01 | |
| Os08t0104600-02 | |
| Os08t0560900-01 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d034904_P001 | Maize | plastid | 58.64 | 82.97 |
| Zm00001d034900_P001 | Maize | plastid | 72.22 | 72.67 |
| GSMUA_Achr4P28830_001 | Banana | cytosol, peroxisome, plasma membrane | 60.49 | 69.5 |
| TraesCS5D01G569800.1 | Wheat | plastid | 69.44 | 69.44 |
| TraesCS5B01G560400.1 | Wheat | plastid | 69.14 | 68.92 |
| KRH26378 | Soybean | plasma membrane | 31.48 | 68.92 |
| TraesCS4A01G319000.1 | Wheat | plastid | 68.21 | 68.0 |
| HORVU5Hr1G124210.2 | Barley | plastid | 68.21 | 67.79 |
| Os08t0526300-02 | Rice | plastid | 67.9 | 66.87 |
| GSMUA_Achr2P12240_001 | Banana | plastid | 65.12 | 66.77 |
| PGSC0003DMT400032525 | Potato | plastid | 64.51 | 65.52 |
| KRH77457 | Soybean | plastid | 63.27 | 64.87 |
| AT4G22890.1 | Thale cress | plastid | 64.51 | 64.51 |
| Solyc08g007770.2.1 | Tomato | plastid | 60.8 | 64.17 |
| CDY41285 | Canola | plastid | 62.96 | 63.95 |
| Bra013653.1-P | Field mustard | plastid | 62.96 | 63.95 |
| PGSC0003DMT400058521 | Potato | plastid | 62.96 | 63.75 |
| KRH57278 | Soybean | plastid | 62.96 | 63.55 |
| CDY10819 | Canola | plastid | 62.35 | 63.32 |
| VIT_02s0025g04710.t01 | Wine grape | plastid | 63.58 | 63.19 |
| CDY68977 | Canola | plastid | 62.35 | 63.12 |
| Bra019349.1-P | Field mustard | plastid | 62.35 | 63.12 |
| CDX94134 | Canola | plastid | 62.04 | 62.81 |
| KRH04003 | Soybean | plastid | 64.2 | 62.65 |
| Solyc08g080050.2.1 | Tomato | plastid | 58.95 | 62.01 |
| CDX90812 | Canola | plastid | 60.49 | 61.25 |
| Bra000757.1-P | Field mustard | plastid | 60.49 | 61.25 |
| AT4G11960.1 | Thale cress | plastid | 58.95 | 61.02 |
| CDY51552 | Canola | plastid | 59.88 | 60.62 |
| KXG37086 | Sorghum | plastid | 71.91 | 57.39 |
| Os08t0310500-00 | Rice | plastid | 12.65 | 31.3 |
Protein Annotations
| EMBL:AK098951 | EnsemblPlants:Os03t0857400-01 | EnsemblPlantsGene:Os03g0857400 | EntrezGene:4334845 | GO:GO:0005575 | GO:GO:0016020 |
| GO:GO:0016021 | PANTHER:PTHR31032 | PANTHER:PTHR31032:SF1 | ProteinID:AAP21396.1 | ProteinID:ABF99994.1 | ProteinID:BAF13869.1 |
| ProteinID:BAS87457.1 | RefSeq:XP_015631327.1 | SEG:seg | TMHMM:TMhelix | UniParc:UPI000019099E | UniProt:Q84M73 |
| MapMan:1.1.6.1.2 | : | : | : | : | : |
Description
tRNA-binding arm domain containing protein. (Os03t0857400-01)
Coordinates
chr3:-:36180601..36182960
Molecular Weight (calculated)
35995.1 Da
IEP (calculated)
4.695
GRAVY (calculated)
-0.127
Length
324 amino acids
Sequence
(BLAST)
(BLAST)
001: MLMASEAWLS PASRLFHPPR SSTAAFFSAS GLPRLPRRSS CALATSTRGR RLRLGATDQQ QQQGKQDGDE VVDSNVLQYC SIDGKGKKAE KRSLGEMEQE
101: FLQALQAFYY DQKAIMSNEE FDNLKEELMW EGSSVVMLSP DEQRLLEASM AYAAGNPIMS DAEFDQLKLR LKKDGSDIVT EGPRCSLRSR KVYSDLTVDY
201: LKMFLLNVPA TTLALGLFFF IDELTGFEIN IFQLPEPFGF IFTWFAALPL ILFIAQSITN AIVNDFLILK GPCPNCGAEN LSFFGTILSV SSGGETNKVK
301: CADCSTEMVY DSKSRLITLP EPSQ
101: FLQALQAFYY DQKAIMSNEE FDNLKEELMW EGSSVVMLSP DEQRLLEASM AYAAGNPIMS DAEFDQLKLR LKKDGSDIVT EGPRCSLRSR KVYSDLTVDY
201: LKMFLLNVPA TTLALGLFFF IDELTGFEIN IFQLPEPFGF IFTWFAALPL ILFIAQSITN AIVNDFLILK GPCPNCGAEN LSFFGTILSV SSGGETNKVK
301: CADCSTEMVY DSKSRLITLP EPSQ
001: MGSKMLFSLT SPRLFSAVSR KPSSSFSPSP PSPSSRTQWT QLSPGKSISL RRRVFLLPAK ATTEQSGPVG GDNVDSNVLP YCSINKAEKK TIGEMEQEFL
101: QALQSFYYDG KAIMSNEEFD NLKEELMWEG SSVVMLSSDE QRFLEASMAY VSGNPILNDE EYDKLKLKLK IDGSDIVSEG PRCSLRSKKV YSDLAVDYFK
201: MLLLNVPATV VALGLFFFLD DITGFEITYI MELPEPYSFI FTWFAAVPVI VYLALSITKL IIKDFLILKG PCPNCGTENT SFFGTILSIS SGGKTNTVKC
301: TNCGTAMVYD SGSRLITLPE GSQA
101: QALQSFYYDG KAIMSNEEFD NLKEELMWEG SSVVMLSSDE QRFLEASMAY VSGNPILNDE EYDKLKLKLK IDGSDIVSEG PRCSLRSKKV YSDLAVDYFK
201: MLLLNVPATV VALGLFFFLD DITGFEITYI MELPEPYSFI FTWFAAVPVI VYLALSITKL IIKDFLILKG PCPNCGTENT SFFGTILSIS SGGKTNTVKC
301: TNCGTAMVYD SGSRLITLPE GSQA
Arabidopsis Description
PGRL1APGR5-LIKE A [Source:UniProtKB/TrEMBL;Acc:A0A178UU76]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.