Subcellular Localization
min:
: max
Winner_takes_all: plastid, extracellular
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- plastid 8
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| nucleus:
19621931
plastid: 21433289 extracellular: 23159799 plasma membrane: 27800704 extracellular: 28232208 |
msms PMID:
27800704
doi
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
msms PMID:
23159799
doi
Plant Molecular Biology and Biotechnology Research Center, Gyeongsang National University, Jinju, 660-701, South Korea.
msms PMID:
21433289
doi
Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.
msms PMID:
28232208
doi
Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea., Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea. Electronic address: stkim71@pusan.ac.kr., Department of Plant Microbe Interactions, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Division of Applied Life Science (BK21 Program), Gyeongsang National University, Jinju, South Korea., National Academy of Agricultural Science, Rural Development Administration, Suwon 441-707, South Korea. Electronic address: srpark@korea.kr., Plant Proteomics Group, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal; Faculty of Health and Sport Sciences, Tsukuba International Academy for Sport Studies (TIAS), University of Tsukuba, 1-1-1 Tennodai, Tsukuba, 305-8574, Ibaraki, Japan.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER93246 | Sorghum | plastid | 85.71 | 86.57 |
| TraesCS5D01G468400.1 | Wheat | plastid | 85.22 | 84.8 |
| TraesCS5B01G466700.1 | Wheat | plastid | 85.22 | 84.39 |
| TraesCS5A01G457500.1 | Wheat | plastid | 85.22 | 84.39 |
| Zm00001d034543_P001 | Maize | plastid | 78.82 | 80.4 |
| KRG91274 | Soybean | nucleus, plastid | 77.34 | 77.34 |
| PGSC0003DMT400030843 | Potato | cytosol, extracellular, plastid | 76.85 | 75.36 |
| VIT_05s0020g03180.t01 | Wine grape | plastid | 74.88 | 74.51 |
| Solyc06g054260.1.1 | Tomato | plastid | 75.86 | 74.04 |
| KRH35533 | Soybean | plastid | 75.86 | 73.33 |
| GSMUA_Achr5P14780_001 | Banana | plastid | 74.38 | 72.95 |
| VIT_07s0151g01000.t01 | Wine grape | plastid | 72.91 | 72.55 |
| GSMUA_Achr4P17120_001 | Banana | plastid | 72.91 | 71.5 |
| AT4G02770.1 | Thale cress | plastid | 71.43 | 69.71 |
| AT1G03130.1 | Thale cress | plastid | 69.95 | 69.61 |
| Zm00001d013039_P001 | Maize | plastid | 77.34 | 66.53 |
| CDY22079 | Canola | plastid | 44.83 | 60.67 |
| Bra036240.1-P | Field mustard | plastid | 72.41 | 52.69 |
| CDY21916 | Canola | plastid | 72.41 | 52.31 |
| HORVU5Hr1G109710.2 | Barley | cytosol, plastid | 68.47 | 50.73 |
Protein Annotations
| MapMan:1.1.4.2.4 | Gene3D:3.30.1470.10 | EntrezGene:4346326 | EMBL:AK061775 | EMBL:AK120372 | EMBL:AY224449 |
| ProteinID:BAD13214.1 | ProteinID:BAF24425.1 | ProteinID:BAT06700.1 | ProteinID:EAZ43663.1 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009522 | GO:GO:0009538 | GO:GO:0009579 |
| GO:GO:0009987 | GO:GO:0015979 | GO:GO:0016020 | EnsemblPlantsGene:Os08g0560900 | EnsemblPlants:Os08t0560900-01 | PFAM:PF02531 |
| PANTHER:PTHR31982 | PANTHER:PTHR31982:SF4 | InterPro:PsaD | InterPro:PsaD_sf | UniProt:Q84PB4 | SUPFAM:SSF64234 |
| UniParc:UPI000005F8B2 | RefSeq:XP_015650057.1 | SEG:seg | : | : | : |
Description
PHOTOSYSTEM I SUBUNITSimilar to Photosystem I reaction center subunit II, chloroplast precursor (Photosystem I 20 kDa subunit) (PSI-D). (Os08t0560900-01);Similar to Photosystem I reaction center subunit II, chloroplast precursor (Photosystem I 20 kDa subunit) (PSI-D). (Os08t0560900-02);Similar to Photosystem I reaction center subunit II, chloroplastic. (Os08t0560900-03)
Coordinates
chr8:-:28083388..28084239
Molecular Weight (calculated)
22035.5 Da
IEP (calculated)
10.269
GRAVY (calculated)
-0.384
Length
203 amino acids
Sequence
(BLAST)
(BLAST)
001: MAMATQASAA KCHLLAAWAP AKPRSSTLSM PTSRAPTSLR AAAEDQPAAA ATEEKKPAPA GFVPPQLDPN TPSPIFGGST GGLLRKAQVE EFYVITWTSP
101: KEQVFEMPTG GAAIMREGPN LLKLARKEQC LALGTRLRSK YKINYQFYRV FPNGEVQYLH PKDGVYPEKV NAGRQGVGQN FRSIGKNVSP IEVKFTGKNV
201: FDI
101: KEQVFEMPTG GAAIMREGPN LLKLARKEQC LALGTRLRSK YKINYQFYRV FPNGEVQYLH PKDGVYPEKV NAGRQGVGQN FRSIGKNVSP IEVKFTGKNV
201: FDI
001: MATQAAGIFS PAITTTTSAV KKLHLFSSSH RPKSLSFTKT AIRAEKTESS SAAPAVKEAP VGFTPPQLDP NTPSPIFAGS TGGLLRKAQV EEFYVITWNS
101: PKEQIFEMPT GGAAIMREGP NLLKLARKEQ CLALGTRLRS KYKITYQFYR VFPNGEVQYL HPKDGVYPEK ANPGREGVGL NMRSIGKNVS PIEVKFTGKQ
201: SYDL
101: PKEQIFEMPT GGAAIMREGP NLLKLARKEQ CLALGTRLRS KYKITYQFYR VFPNGEVQYL HPKDGVYPEK ANPGREGVGL NMRSIGKNVS PIEVKFTGKQ
201: SYDL
Arabidopsis Description
PSAD2Photosystem I reaction center subunit II-2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SA56]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.