Factsheet for Os12t0564400-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 6
cytosol 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

plasma membrane: 27800704

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os07t0275901-00	Rice	cytosol	26.91	88.16
Os07t0275100-00	Rice	endoplasmic reticulum, golgi, vacuole	83.13	81.18
OQU79328	Sorghum	endoplasmic reticulum, plastid	77.11	72.45
Os07t0275801-00	Rice	cytosol, mitochondrion, plastid	22.89	71.25
TraesCS5B01G093100.1	Wheat	plastid	73.9	66.19
TraesCS5A01G087200.1	Wheat	plastid	73.9	66.19
KRH68425	Soybean	nucleus, plastid	66.67	64.34
HORVU5Hr1G022750.1	Barley	plastid	73.49	63.32
GSMUA_Achr3P12740_001	Banana	plastid	65.06	63.03
VIT_14s0060g00850.t01	Wine grape	plastid	62.25	62.5
TraesCS5D01G099000.1	Wheat	plastid	75.1	62.33
CDY54970	Canola	plastid	65.06	60.9
Bra038081.1-P	Field mustard	plastid	63.05	58.8
CDY22740	Canola	plastid	63.05	58.8
KRG96702	Soybean	cytosol	44.98	58.03
CDY22909	Canola	plastid	62.65	57.99
Bra039542.1-P	Field mustard	plastid	62.65	57.99
Zm00001d030638_P001	Maize	plastid	77.11	53.93
Solyc01g106090.2.1	Tomato	plastid	61.85	53.66
AT4G15510.1	Thale cress	plastid	61.85	53.66
PGSC0003DMT400027723	Potato	cytosol	61.45	53.31

Protein Annotations

MapMan:1.1.4.3.2	Gene3D:3.40.1000.10	EntrezGene:4352538	ProteinID:ABA98969.2	EMBL:AK059949	EMBL:AK104548
ProteinID:BAF30060.1	ProteinID:BAT17674.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005509	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0008150	GO:GO:0008152	GO:GO:0009523	GO:GO:0009579
GO:GO:0009654	GO:GO:0009987	GO:GO:0015979	GO:GO:0016020	GO:GO:0019898	InterPro:IPR016123
InterPro:Mog1/PsbP_a/b/a-sand	EnsemblPlantsGene:Os12g0564400	EnsemblPlants:Os12t0564400-01	PFAM:PF01789	PANTHER:PTHR31407	PANTHER:PTHR31407:SF15
InterPro:PsbP	UniProt:Q2QNI4	SUPFAM:SSF55724	UniParc:UPI0000D89E39	RefSeq:XP_015619918.1	SEG:seg

Description

Oxygen-evolving complex protein PsbPSimilar to Thylakoid lumenal 21.5 kDa protein, chloroplast precursor. (Os12t0564400-01);Similar to PsbP. (Os12t0564400-02)

Coordinates

chr12:+:23148319..23157101

Molecular Weight (calculated)

28202.7 Da

IEP (calculated)

9.299

GRAVY (calculated)

-0.370

Length

249 amino acids

Sequence
(BLAST)

001: MAIVAVTAGG RRPPCRRVPP AASPPARLSC RCATHTVPRR NVLSTMLSTS TVFLFGPKQI TLAETTGGTF REYIDTFDGY SFLYPKSWIQ VRGAGADIFF
101: RDPFFLDENM SVEISSPSSS KYMTVEDLGP PEKAAERVLQ QYLTEFMSTR LGVRRTSNIL SASSKVADDG KLYYEVEVNI KSFASNNELA VMPQDRVQRL
201: EWDRRYLSVL GVENKRLYEL RLQSPEKVFK EEEGDLRRVM DSFRVNKTA

Best Arabidopsis Sequence Match ( AT4G15510.1 )
(BLAST)

001: MASSAFAFPS YIITKGASTD SFKSTSLSSS RSLVTDFHLL FSRPISSGPK YQSAKSAKPE SPVAINCLTD AKQVCAVGRR KSMMMGLLMS GLIVSQANLP
101: TAFASTPVFR EYIDTFDGYS FKYPQNWIQV RGAGADIFFR DPVVLDENLS VEFSSPSSSN YTSLEDLGSP EEVGKRVLRQ YLTEFMSTRL GVKRQANILS
201: TSSRVADDGK LYYQVEVNIK SYANNNELAV MPQDRVARLE WNRRYLAVLG VENDRLYSIR LQTPEKVFLE EEKDLRRVMD SFRVEKI

Arabidopsis Description

PPD1PPD1 [Source:UniProtKB/TrEMBL;Acc:A0A178UV94]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.