CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH68425	Soybean	nucleus, plastid	76.17	56.98
VIT_14s0060g00850.t01	Wine grape	plastid	66.32	51.61
GSMUA_Achr3P12740_001	Banana	plastid	60.1	45.14
Os12t0564400-01	Rice	plasma membrane	58.03	44.98
CDY54970	Canola	plastid	60.62	43.98
Os07t0275100-00	Rice	endoplasmic reticulum, golgi, vacuole	57.51	43.53
Bra038081.1-P	Field mustard	plastid	60.1	43.45
CDY22740	Canola	plastid	60.1	43.45
Bra039542.1-P	Field mustard	plastid	60.1	43.12
CDY22909	Canola	plastid	59.59	42.75
Solyc01g106090.2.1	Tomato	plastid	63.21	42.51
PGSC0003DMT400027723	Potato	cytosol	62.69	42.16
OQU79328	Sorghum	endoplasmic reticulum, plastid	56.99	41.51
TraesCS5A01G087200.1	Wheat	plastid	56.48	39.21
TraesCS5B01G093100.1	Wheat	plastid	56.48	39.21
Os07t0275901-00	Rice	cytosol	15.03	38.16
AT4G15510.1	Thale cress	plastid	55.96	37.63
HORVU5Hr1G022750.1	Barley	plastid	54.92	36.68
TraesCS5D01G099000.1	Wheat	plastid	56.48	36.33
Zm00001d030638_P001	Maize	plastid	56.48	30.62
Os07t0275801-00	Rice	cytosol, mitochondrion, plastid	9.84	23.75

Protein Annotations

MapMan:1.1.4.3.2	Gene3D:3.40.1000.10	UniProt:A0A0R0F314	EMBL:ACUP02012162	EnsemblPlantsGene:GLYMA_19G227400	GO:GO:0003674
GO:GO:0005488	GO:GO:0005509	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0008150
GO:GO:0008152	GO:GO:0009523	GO:GO:0009579	GO:GO:0009654	GO:GO:0009987	GO:GO:0015979
GO:GO:0016020	GO:GO:0019898	InterPro:IPR016123	EnsemblPlants:KRG96702	ProteinID:KRG96702	ProteinID:KRG96702.1
InterPro:Mog1/PsbP_a/b/a-sand	PFAM:PF01789	PANTHER:PTHR31407	PANTHER:PTHR31407:SF15	InterPro:PsbP	SUPFAM:SSF55724
UniParc:UPI0006ED88E1	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr19:+:47886222..47890015

Molecular Weight (calculated)

22494.9 Da

IEP (calculated)

5.474

GRAVY (calculated)

-0.409

Length

193 amino acids

Sequence
(BLAST)

001: MAKRDVEEND DLKLEKETRM AKAFAVPRRK AMSLILSSYV LSEVGLALAQ QSPVFREYID AFDGCSFQYP GSWIQNVEDL GAPQEAGKKV LKQYLTEFMS
101: TRLGVRRESN ILSTSSRVTD DGRLYYQIEV NIKSYANNNE LAVMPEDRVV RLEWDPRYLS VLGVENNQLY ELRLQVCFQR RKMIFVESWI RFE

Best Arabidopsis Sequence Match ( AT4G15510.1 )
(BLAST)

001: MASSAFAFPS YIITKGASTD SFKSTSLSSS RSLVTDFHLL FSRPISSGPK YQSAKSAKPE SPVAINCLTD AKQVCAVGRR KSMMMGLLMS GLIVSQANLP
101: TAFASTPVFR EYIDTFDGYS FKYPQNWIQV RGAGADIFFR DPVVLDENLS VEFSSPSSSN YTSLEDLGSP EEVGKRVLRQ YLTEFMSTRL GVKRQANILS
201: TSSRVADDGK LYYQVEVNIK SYANNNELAV MPQDRVARLE WNRRYLAVLG VENDRLYSIR LQTPEKVFLE EEKDLRRVMD SFRVEKI

Arabidopsis Description

PPD1PPD1 [Source:UniProtKB/TrEMBL;Acc:A0A178UV94]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.