Factsheet for Solyc01g106090.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
cytosol 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

plastid: 20363867
plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400027723	Potato	cytosol	98.61	98.61
Os07t0275901-00	Rice	cytosol	19.16	72.37
KRH68425	Soybean	nucleus, plastid	60.63	67.44
VIT_14s0060g00850.t01	Wine grape	plastid	57.49	66.53
Bra038081.1-P	Field mustard	plastid	59.23	63.67
CDY22740	Canola	plastid	59.23	63.67
KRG96702	Soybean	cytosol	42.51	63.21
Bra039542.1-P	Field mustard	plastid	59.23	63.2
CDY22909	Canola	plastid	58.88	62.83
CDY54970	Canola	plastid	57.84	62.41
GSMUA_Achr3P12740_001	Banana	plastid	55.75	62.26
Os12t0564400-01	Rice	plasma membrane	53.66	61.85
Os07t0275801-00	Rice	cytosol, mitochondrion, plastid	17.07	61.25
Os07t0275100-00	Rice	endoplasmic reticulum, golgi, vacuole	53.31	60.0
OQU79328	Sorghum	endoplasmic reticulum, plastid	54.36	58.87
AT4G15510.1	Thale cress	plastid	58.19	58.19
TraesCS5B01G093100.1	Wheat	plastid	54.01	55.76
TraesCS5A01G087200.1	Wheat	plastid	53.66	55.4
HORVU5Hr1G022750.1	Barley	plastid	54.36	53.98
TraesCS5D01G099000.1	Wheat	plastid	54.36	52.0
Zm00001d030638_P001	Maize	plastid	54.7	44.1

Protein Annotations

MapMan:1.1.4.3.2	Gene3D:3.40.1000.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005509	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152
GO:GO:0009507	GO:GO:0009523	GO:GO:0009535	GO:GO:0009536	GO:GO:0009543	GO:GO:0009570
GO:GO:0009579	GO:GO:0009654	GO:GO:0009987	GO:GO:0015979	GO:GO:0016020	GO:GO:0016043
GO:GO:0019898	GO:GO:0031977	GO:GO:0048564	InterPro:IPR016123	UniProt:K4B2H7	InterPro:Mog1/PsbP_a/b/a-sand
PFAM:PF01789	PANTHER:PTHR31407	PANTHER:PTHR31407:SF15	InterPro:PsbP	SUPFAM:SSF55724	EnsemblPlantsGene:Solyc01g106090.2
EnsemblPlants:Solyc01g106090.2.1	UniParc:UPI000276752E	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr1:+:94080162..94083169

Molecular Weight (calculated)

32366.5 Da

IEP (calculated)

9.056

GRAVY (calculated)

-0.378

Length

287 amino acids

Sequence
(BLAST)

001: MRVLQASNIY GVGFGIPSIS TRPNSSYHRH ATIATGEALA KSAPIGRKFS EQHSLKKGDM EKEGNSVVLE KKDFAVPRRK AMALILSSFV LSNYELPKVA
101: YAQSVEFREY IDTFDGYSFM YPRNWIQVRG AGADIFFRDP LVLDENLSVE ISSPSSSKYK SVKDLGPPEE AGKGVLKQYL TEFMSTRLGV RRESSVLSTS
201: SRVADDGKLY YDVEVNIKSY ANNNELAVMP QDRVARLEWD RRYLSVLGVE NNCLYELRIQ TPEKVFVQEE SDIRAIMNSF RANKIAA

Best Arabidopsis Sequence Match ( AT4G15510.1 )
(BLAST)

001: MASSAFAFPS YIITKGASTD SFKSTSLSSS RSLVTDFHLL FSRPISSGPK YQSAKSAKPE SPVAINCLTD AKQVCAVGRR KSMMMGLLMS GLIVSQANLP
101: TAFASTPVFR EYIDTFDGYS FKYPQNWIQV RGAGADIFFR DPVVLDENLS VEFSSPSSSN YTSLEDLGSP EEVGKRVLRQ YLTEFMSTRL GVKRQANILS
201: TSSRVADDGK LYYQVEVNIK SYANNNELAV MPQDRVARLE WNRRYLAVLG VENDRLYSIR LQTPEKVFLE EEKDLRRVMD SFRVEKI

Arabidopsis Description

PPD1PPD1 [Source:UniProtKB/TrEMBL;Acc:A0A178UV94]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.