CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY22909	Canola	plastid	82.71	81.78
CDY22740	Canola	plastid	79.7	79.4
Os07t0275901-00	Rice	cytosol	20.3	71.05
VIT_14s0060g00850.t01	Wine grape	plastid	65.41	70.16
AT4G15510.1	Thale cress	plastid	75.56	70.03
KRH68425	Soybean	nucleus, plastid	64.66	66.67
Os12t0564400-01	Rice	plasma membrane	60.9	65.06
GSMUA_Achr3P12740_001	Banana	plastid	61.28	63.42
KRG96702	Soybean	cytosol	43.98	60.62
Os07t0275801-00	Rice	cytosol, mitochondrion, plastid	18.05	60.0
Os07t0275100-00	Rice	endoplasmic reticulum, golgi, vacuole	57.52	60.0
PGSC0003DMT400027723	Potato	cytosol	62.41	57.84
Solyc01g106090.2.1	Tomato	plastid	62.41	57.84
OQU79328	Sorghum	endoplasmic reticulum, plastid	57.52	57.74
TraesCS5B01G093100.1	Wheat	plastid	58.27	55.76
TraesCS5A01G087200.1	Wheat	plastid	57.52	55.04
HORVU5Hr1G022750.1	Barley	plastid	57.52	52.94
TraesCS5D01G099000.1	Wheat	plastid	57.89	51.33
Zm00001d030638_P001	Maize	plastid	59.02	44.1

Protein Annotations

MapMan:1.1.4.3.2	Gene3D:3.40.1000.10	GO:A0A078IUC6	UniProt:A0A078IUC6	EnsemblPlants:CDY54970	ProteinID:CDY54970
ProteinID:CDY54970.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005509	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0008150	GO:GO:0008152	GO:GO:0009523	GO:GO:0009579	GO:GO:0009654
GO:GO:0009987	GO:GO:0015979	GO:GO:0016020	GO:GO:0019898	EnsemblPlantsGene:GSBRNA2T00014925001	InterPro:IPR016123
InterPro:Mog1/PsbP_a/b/a-sand	PFAM:PF01789	PANTHER:PTHR31407	PANTHER:PTHR31407:SF15	InterPro:PsbP	SUPFAM:SSF55724
UniParc:UPI0004EDC81A	SEG:seg	:	:	:	:

Description

BnaCnng27800DBnaCnng27800D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IUC6]

Coordinates

chrLK033366:-:7902..9646

Molecular Weight (calculated)

30233.3 Da

IEP (calculated)

9.821

GRAVY (calculated)

-0.429

Length

266 amino acids

Sequence
(BLAST)

001: MVTLISPRSL FPPLSSKPTS KSSSFSKPVS SQSPKFAKPE SPAPHKLVNR CQTVGRRRSM MMGGLLMSGL MLSEANLPTS AFALTSVFRE YIDTFDGYSF
101: KYPQNWIQVR GAGADIFFRD PIVLDENLSV EFSSPSSSKY KSLEDLGPPE EAGKKVLRQY LTEFMSTRLG VKRESNILTT SSRVADDGKL YYQVEVNIKS
201: YANNNELAVM PQDRVARLEW DRRYLAVLGV ENNRLYSLRL QTPEKVFLEE EKDLRRVMDS FRVEKI

Best Arabidopsis Sequence Match ( AT4G15510.1 )
(BLAST)

001: MASSAFAFPS YIITKGASTD SFKSTSLSSS RSLVTDFHLL FSRPISSGPK YQSAKSAKPE SPVAINCLTD AKQVCAVGRR KSMMMGLLMS GLIVSQANLP
101: TAFASTPVFR EYIDTFDGYS FKYPQNWIQV RGAGADIFFR DPVVLDENLS VEFSSPSSSN YTSLEDLGSP EEVGKRVLRQ YLTEFMSTRL GVKRQANILS
201: TSSRVADDGK LYYQVEVNIK SYANNNELAV MPQDRVARLE WNRRYLAVLG VENDRLYSIR LQTPEKVFLE EEKDLRRVMD SFRVEKI

Arabidopsis Description

PPD1PPD1 [Source:UniProtKB/TrEMBL;Acc:A0A178UV94]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.