Factsheet for PGSC0003DMT400027723

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 5
cytosol 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

cytosol: 22313117

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g106090.2.1	Tomato	plastid	98.61	98.61
Os07t0275901-00	Rice	cytosol	19.16	72.37
KRH68425	Soybean	nucleus, plastid	60.28	67.05
VIT_14s0060g00850.t01	Wine grape	plastid	57.49	66.53
Bra038081.1-P	Field mustard	plastid	59.23	63.67
CDY22740	Canola	plastid	59.23	63.67
Bra039542.1-P	Field mustard	plastid	59.23	63.2
CDY22909	Canola	plastid	58.88	62.83
KRG96702	Soybean	cytosol	42.16	62.69
CDY54970	Canola	plastid	57.84	62.41
GSMUA_Achr3P12740_001	Banana	plastid	55.4	61.87
Os12t0564400-01	Rice	plasma membrane	53.31	61.45
Os07t0275801-00	Rice	cytosol, mitochondrion, plastid	17.07	61.25
Os07t0275100-00	Rice	endoplasmic reticulum, golgi, vacuole	52.96	59.61
OQU79328	Sorghum	endoplasmic reticulum, plastid	54.01	58.49
AT4G15510.1	Thale cress	plastid	58.19	58.19
TraesCS5B01G093100.1	Wheat	plastid	53.66	55.4
TraesCS5A01G087200.1	Wheat	plastid	53.31	55.04
HORVU5Hr1G022750.1	Barley	plastid	54.01	53.63
TraesCS5D01G099000.1	Wheat	plastid	54.01	51.67
Zm00001d030638_P001	Maize	plastid	54.01	43.54

Protein Annotations

MapMan:1.1.4.3.2	EntrezGene:102584851	Gene3D:3.40.1000.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005509
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0008150
GO:GO:0008152	GO:GO:0009507	GO:GO:0009523	GO:GO:0009535	GO:GO:0009536	GO:GO:0009543
GO:GO:0009570	GO:GO:0009579	GO:GO:0009654	GO:GO:0009987	GO:GO:0015979	GO:GO:0016020
GO:GO:0016043	GO:GO:0019898	GO:GO:0031977	GO:GO:0048564	InterPro:IPR016123	UniProt:M1AQ41
InterPro:Mog1/PsbP_a/b/a-sand	PFAM:PF01789	EnsemblPlantsGene:PGSC0003DMG400010682	PGSC:PGSC0003DMG400010682	EnsemblPlants:PGSC0003DMT400027723	PANTHER:PTHR31407
PANTHER:PTHR31407:SF15	InterPro:PsbP	SUPFAM:SSF55724	UniParc:UPI0002966396	RefSeq:XP_006351709.1	SEG:seg

Description

Thylakoid lumenal 21.5 kDa protein, chloroplast [Source:PGSC_GENE;Acc:PGSC0003DMG400010682]

Coordinates

chr1:+:82784076..82787500

Molecular Weight (calculated)

32347.5 Da

IEP (calculated)

9.055

GRAVY (calculated)

-0.382

Length

287 amino acids

Sequence
(BLAST)

001: MRVLQASNIY GVGFGIPSIS TRPNSSYQRH ATIATGEALA KSAPIGRKFS EQHSLKKGDM EKEGNSVVLE KKDFAVPRRK AMALIFSSFV LSNYELPKAA
101: YAQAVEFREY IDTFDGYSFM YPRNWIQVRG AGADIFFRDP LVLDENLSVE ISSPSSSKYK SVKDLGPPEE AGKGVLKQYL TEFMSTRLGV RRESSVLSTS
201: SRVADDGKLY YDVEVNIKSY ANNNELAVMP QDRVARLEWD RRYLSVLGVE NNCLYELRIQ TPEKVFVQEE SDIRAIMNSF RANKIAA

Best Arabidopsis Sequence Match ( AT4G15510.1 )
(BLAST)

001: MASSAFAFPS YIITKGASTD SFKSTSLSSS RSLVTDFHLL FSRPISSGPK YQSAKSAKPE SPVAINCLTD AKQVCAVGRR KSMMMGLLMS GLIVSQANLP
101: TAFASTPVFR EYIDTFDGYS FKYPQNWIQV RGAGADIFFR DPVVLDENLS VEFSSPSSSN YTSLEDLGSP EEVGKRVLRQ YLTEFMSTRL GVKRQANILS
201: TSSRVADDGK LYYQVEVNIK SYANNNELAV MPQDRVARLE WNRRYLAVLG VENDRLYSIR LQTPEKVFLE EEKDLRRVMD SFRVEKI

Arabidopsis Description

PPD1PPD1 [Source:UniProtKB/TrEMBL;Acc:A0A178UV94]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.