CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
cytosol 1

Predictors

GFP

MS/MS

Papers

plastid: 21417358

msms PMID: 21417358 doi

DR Demartini, R Jain, G Agrawal, JJ Thelen

Department of Biochemistry and Interdisciplinary Plant Group, Christopher S. Bond Life Sciences Center, University of Missouri, Columbia, Missouri 65211, United States.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra038081.1-P	Field mustard	plastid	100.0	100.0
CDY22909	Canola	plastid	85.77	85.13
CDY54970	Canola	plastid	79.4	79.7
AT4G15510.1	Thale cress	plastid	79.03	73.52
Os07t0275901-00	Rice	cytosol	19.85	69.74
VIT_14s0060g00850.t01	Wine grape	plastid	64.04	68.95
KRH68425	Soybean	nucleus, plastid	64.42	66.67
GSMUA_Achr3P12740_001	Banana	plastid	61.05	63.42
Os12t0564400-01	Rice	plasma membrane	58.8	63.05
Os07t0275100-00	Rice	endoplasmic reticulum, golgi, vacuole	57.68	60.39
KRG96702	Soybean	cytosol	43.45	60.1
Solyc01g106090.2.1	Tomato	plastid	63.67	59.23
PGSC0003DMT400027723	Potato	cytosol	63.67	59.23
Os07t0275801-00	Rice	cytosol, mitochondrion, plastid	17.6	58.75
OQU79328	Sorghum	endoplasmic reticulum, plastid	56.93	57.36
TraesCS5A01G087200.1	Wheat	plastid	56.55	54.32
TraesCS5B01G093100.1	Wheat	plastid	56.55	54.32
HORVU5Hr1G022750.1	Barley	plastid	56.55	52.25
TraesCS5D01G099000.1	Wheat	plastid	56.93	50.67
Zm00001d030638_P001	Maize	plastid	58.8	44.1

Protein Annotations

MapMan:1.1.4.3.2	Gene3D:3.40.1000.10	GO:A0A078G8G2	UniProt:A0A078G8G2	EnsemblPlants:CDY22740	ProteinID:CDY22740
ProteinID:CDY22740.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005509	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0008150	GO:GO:0008152	GO:GO:0009523	GO:GO:0009579	GO:GO:0009654
GO:GO:0009987	GO:GO:0015979	GO:GO:0016020	GO:GO:0019898	EnsemblPlantsGene:GSBRNA2T00021046001	InterPro:IPR016123
InterPro:Mog1/PsbP_a/b/a-sand	PFAM:PF01789	PANTHER:PTHR31407	PANTHER:PTHR31407:SF15	InterPro:PsbP	SUPFAM:SSF55724
UniParc:UPI0002545BF4	SEG:seg	:	:	:	:

Description

BnaA08g05700DBnaA08g05700D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G8G2]

Coordinates

chrLK032135:+:192080..193491

Molecular Weight (calculated)

30214.2 Da

IEP (calculated)

9.172

GRAVY (calculated)

-0.384

Length

267 amino acids

Sequence
(BLAST)

001: METLFSPRSL SPPLTIPTPS PLSLLRPISS QSAKLTKPES PVPQNLSTNA KQACAVGRRR LMMGGLLMSG LIVSEANLPT SAFALTPVFR EYIDTFDGYS
101: FKYPQNWIQV RGAGADIFFR DPIVLDENLS VEFSSPSSSK YKSLEDLGSP EEAGKKVLRQ YLTEFMSTRL GVKRESNILT TSSRVADDGK LYYQVEVNIK
201: SYANNNELAV MPQDRVARLE WDRRYLAVLG VENNRLYSLR LQTPEKVFQE EEKDLRRVMD SFRVEKI

Best Arabidopsis Sequence Match ( AT4G15510.1 )
(BLAST)

001: MASSAFAFPS YIITKGASTD SFKSTSLSSS RSLVTDFHLL FSRPISSGPK YQSAKSAKPE SPVAINCLTD AKQVCAVGRR KSMMMGLLMS GLIVSQANLP
101: TAFASTPVFR EYIDTFDGYS FKYPQNWIQV RGAGADIFFR DPVVLDENLS VEFSSPSSSN YTSLEDLGSP EEVGKRVLRQ YLTEFMSTRL GVKRQANILS
201: TSSRVADDGK LYYQVEVNIK SYANNNELAV MPQDRVARLE WNRRYLAVLG VENDRLYSIR LQTPEKVFLE EEKDLRRVMD SFRVEKI

Arabidopsis Description

PPD1PPD1 [Source:UniProtKB/TrEMBL;Acc:A0A178UV94]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.