Factsheet for GSMUA_Achr3P12740_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os07t0275901-00	Rice	cytosol	21.4	72.37
VIT_14s0060g00850.t01	Wine grape	plastid	69.65	72.18
KRH68425	Soybean	nucleus, plastid	65.76	65.5
Os12t0564400-01	Rice	plasma membrane	63.03	65.06
Os07t0275100-00	Rice	endoplasmic reticulum, golgi, vacuole	63.03	63.53
CDY54970	Canola	plastid	63.42	61.28
OQU79328	Sorghum	endoplasmic reticulum, plastid	63.03	61.13
Bra038081.1-P	Field mustard	plastid	63.42	61.05
CDY22740	Canola	plastid	63.42	61.05
KRG96702	Soybean	cytosol	45.14	60.1
CDY22909	Canola	plastid	62.26	59.48
Bra039542.1-P	Field mustard	plastid	62.26	59.48
Os07t0275801-00	Rice	cytosol, mitochondrion, plastid	18.29	58.75
TraesCS5A01G087200.1	Wheat	plastid	62.26	57.55
TraesCS5B01G093100.1	Wheat	plastid	62.26	57.55
Solyc01g106090.2.1	Tomato	plastid	62.26	55.75
PGSC0003DMT400027723	Potato	cytosol	61.87	55.4
HORVU5Hr1G022750.1	Barley	plastid	61.87	55.02
AT4G15510.1	Thale cress	plastid	60.7	54.36
TraesCS5D01G099000.1	Wheat	plastid	62.65	53.67
Zm00001d030638_P001	Maize	plastid	63.42	45.79

Protein Annotations

MapMan:1.1.4.3.2	Gene3D:3.40.1000.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005509	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152
GO:GO:0009507	GO:GO:0009523	GO:GO:0009535	GO:GO:0009536	GO:GO:0009543	GO:GO:0009570
GO:GO:0009579	GO:GO:0009654	GO:GO:0009987	GO:GO:0015979	GO:GO:0016020	GO:GO:0016043
GO:GO:0019898	GO:GO:0031977	GO:GO:0048564	EnsemblPlantsGene:GSMUA_Achr3G12740_001	EnsemblPlants:GSMUA_Achr3P12740_001	EnsemblPlants:GSMUA_Achr3T12740_001
InterPro:IPR016123	UniProt:M0SE41	InterPro:Mog1/PsbP_a/b/a-sand	PFAM:PF01789	PANTHER:PTHR31407	PANTHER:PTHR31407:SF15
InterPro:PsbP	SUPFAM:SSF55724	UniParc:UPI000296AD10	SEG:seg	:	:

Description

PsbP domain-containing protein 1, chloroplastic [Source:GMGC_GENE;Acc:GSMUA_Achr3G12740_001]

Coordinates

chr3:+:9436291..9439108

Molecular Weight (calculated)

29096.2 Da

IEP (calculated)

6.081

GRAVY (calculated)

-0.448

Length

257 amino acids

Sequence
(BLAST)

001: MGSISAPRLS SRTRRSAVPP VSASTSTRNE NGSSPSCRHR SIAALTRRDV MASVLSSFVF SQLGSCEDTL AEPSVGFREY IDTFDGYTFL YPQNWIQVRG
101: SGADIFFRDP FVLDENLSVE LSSPSSSRYK SVKDLGTPQE AANKVLKQYL TEFMSTRLGV RRESNILSAS SRIADDGRLY YQVEVNIKSY ASNNELAVMP
201: QDRIQRLEWD RRYLSVLGVE NNQLYELRLQ TPENVFLEEE KDLRDVMDSF RVVKAVN

Best Arabidopsis Sequence Match ( AT4G15510.1 )
(BLAST)

001: MASSAFAFPS YIITKGASTD SFKSTSLSSS RSLVTDFHLL FSRPISSGPK YQSAKSAKPE SPVAINCLTD AKQVCAVGRR KSMMMGLLMS GLIVSQANLP
101: TAFASTPVFR EYIDTFDGYS FKYPQNWIQV RGAGADIFFR DPVVLDENLS VEFSSPSSSN YTSLEDLGSP EEVGKRVLRQ YLTEFMSTRL GVKRQANILS
201: TSSRVADDGK LYYQVEVNIK SYANNNELAV MPQDRVARLE WNRRYLAVLG VENDRLYSIR LQTPEKVFLE EEKDLRRVMD SFRVEKI

Arabidopsis Description

PPD1PPD1 [Source:UniProtKB/TrEMBL;Acc:A0A178UV94]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.