Factsheet for Bra039542.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY22909	Canola	plastid	99.63	99.63
Bra038081.1-P	Field mustard	plastid	85.5	86.14
AT4G15510.1	Thale cress	plastid	79.18	74.22
Os07t0275901-00	Rice	cytosol	20.07	71.05
VIT_14s0060g00850.t01	Wine grape	plastid	61.71	66.94
KRH68425	Soybean	nucleus, plastid	63.2	65.89
Os12t0564400-01	Rice	plasma membrane	57.99	62.65
GSMUA_Achr3P12740_001	Banana	plastid	59.48	62.26
Os07t0275100-00	Rice	endoplasmic reticulum, golgi, vacuole	57.62	60.78
KRG96702	Soybean	cytosol	43.12	60.1
Os07t0275801-00	Rice	cytosol, mitochondrion, plastid	17.84	60.0
PGSC0003DMT400027723	Potato	cytosol	63.2	59.23
Solyc01g106090.2.1	Tomato	plastid	63.2	59.23
OQU79328	Sorghum	endoplasmic reticulum, plastid	55.76	56.6
TraesCS5A01G087200.1	Wheat	plastid	56.51	54.68
TraesCS5B01G093100.1	Wheat	plastid	56.51	54.68
HORVU5Hr1G022750.1	Barley	plastid	56.51	52.6
TraesCS5D01G099000.1	Wheat	plastid	56.88	51.0
Zm00001d030638_P001	Maize	plastid	58.36	44.1

Protein Annotations

MapMan:1.1.4.3.2	Gene3D:3.40.1000.10	EnsemblPlantsGene:Bra039542	EnsemblPlants:Bra039542.1	EnsemblPlants:Bra039542.1-P	GO:GO:0003674
GO:GO:0005488	GO:GO:0005509	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0008150
GO:GO:0008152	GO:GO:0009523	GO:GO:0009579	GO:GO:0009654	GO:GO:0009987	GO:GO:0015979
GO:GO:0016020	GO:GO:0019898	InterPro:IPR016123	UniProt:M4FEM0	InterPro:Mog1/PsbP_a/b/a-sand	PFAM:PF01789
PANTHER:PTHR31407	PANTHER:PTHR31407:SF15	InterPro:PsbP	SUPFAM:SSF55724	UniParc:UPI0002544C61	SEG:seg

Description

AT4G15510 (E=2e-100) | photosystem II reaction center PsbP family protein

Coordinates

chrA01:-:11715186..11716343

Molecular Weight (calculated)

30520.6 Da

IEP (calculated)

9.399

GRAVY (calculated)

-0.402

Length

269 amino acids

Sequence
(BLAST)

001: METLISPRSL FPLLKKPTSK SSSSFSRPVS SQSPKLTKPE SPAPINLLTD AKQACAVGRR RSMMMGGLLM SGLMLSEANL PTSAFALTPV FREYIDTFDG
101: YSFKYPQNWI QVRGAGADIF FRDPIVLDEN LSVEFSSPSS SKYKSLEDLG SPEEAGKRVL RQYLTEFMST RLGVKRESNI LTTSSRVADD GNLYYQVEVN
201: IKSYANNNEL AVMPQDRVAR LEWDRRYLAV LGVENNRLYS LRLQTPEKVF LEEEKDLRRV MDSFRVEKI

Best Arabidopsis Sequence Match ( AT4G15510.1 )
(BLAST)

001: MASSAFAFPS YIITKGASTD SFKSTSLSSS RSLVTDFHLL FSRPISSGPK YQSAKSAKPE SPVAINCLTD AKQVCAVGRR KSMMMGLLMS GLIVSQANLP
101: TAFASTPVFR EYIDTFDGYS FKYPQNWIQV RGAGADIFFR DPVVLDENLS VEFSSPSSSN YTSLEDLGSP EEVGKRVLRQ YLTEFMSTRL GVKRQANILS
201: TSSRVADDGK LYYQVEVNIK SYANNNELAV MPQDRVARLE WNRRYLAVLG VENDRLYSIR LQTPEKVFLE EEKDLRRVMD SFRVEKI

Arabidopsis Description

PPD1PPD1 [Source:UniProtKB/TrEMBL;Acc:A0A178UV94]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.