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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion, plastid, cytosol

Predictor Summary:
  • extracellular 2
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 1
  • golgi 1
  • plastid 3
  • cytosol 1
  • mitochondrion 2
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Os07t0275901-00 Rice cytosol 52.5 55.26
Os12t0564400-01 Rice plasma membrane 71.25 22.89
Os07t0275100-00 Rice endoplasmic reticulum, golgi, vacuole 70.0 21.96
OQU79328 Sorghum endoplasmic reticulum, plastid 66.25 20.0
KRH68425 Soybean nucleus, plastid 61.25 18.99
GSMUA_Achr3P12740_001 Banana plastid 58.75 18.29
VIT_14s0060g00850.t01 Wine grape plastid 56.25 18.15
CDY54970 Canola plastid 60.0 18.05
Bra039542.1-P Field mustard plastid 60.0 17.84
CDY22909 Canola plastid 60.0 17.84
TraesCS5B01G093100.1 Wheat plastid 61.25 17.63
Bra038081.1-P Field mustard plastid 58.75 17.6
CDY22740 Canola plastid 58.75 17.6
TraesCS5A01G087200.1 Wheat plastid 60.0 17.27
PGSC0003DMT400027723 Potato cytosol 61.25 17.07
Solyc01g106090.2.1 Tomato plastid 61.25 17.07
HORVU5Hr1G022750.1 Barley plastid 60.0 16.61
AT4G15510.1 Thale cress plastid 57.5 16.03
TraesCS5D01G099000.1 Wheat plastid 60.0 16.0
Zm00001d030638_P001 Maize plastid 65.0 14.61
KRG96702 Soybean cytosol 23.75 9.84
Protein Annotations
Gene3D:3.40.1000.10MapMan:35.2UniProt:A0A0P0X511ProteinID:BAT00968.1GO:GO:0003674GO:GO:0005488
GO:GO:0005509GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0008150GO:GO:0008152
GO:GO:0009523GO:GO:0009579GO:GO:0009654GO:GO:0009987GO:GO:0015979GO:GO:0016020
GO:GO:0019898InterPro:IPR016123InterPro:Mog1/PsbP_a/b/a-sandEnsemblPlantsGene:Os07g0275801EnsemblPlants:Os07t0275801-00PFAM:PF01789
PANTHER:PTHR31407PANTHER:PTHR31407:SF15InterPro:PsbPSUPFAM:SSF55724UniParc:UPI000393A824:
Description
Similar to Chloroplast photosystem II reaction center protein (Fragment). (Os07t0275801-00)
Coordinates
chr7:-:10288817..10292458
Molecular Weight (calculated)
9013.6 Da
IEP (calculated)
6.501
GRAVY (calculated)
-0.458
Length
80 amino acids
Sequence
(BLAST)
1: RRQPVVHSGS TLTHDGYSFL YPNSWIQVRG AGADLFRDPF VLDENMSVEI SSPSSSKYVT VEDLGPPPMR RLQRECCNIT
Best Arabidopsis Sequence Match ( AT4G15510.2 )
(BLAST)
001: MASSAFAFPS YIITKGASTD SFKSTSLSSS RSLVTDFHLL FSRPISSGPK YQSAKSAKPE SPVAINCLTD AKQVCAVGRR KSMMMGLLMS GLIVSQANLP
101: TAFASTPVFR EYIDTFDGYS FKYPQNWIQV RGAGADIFFR DPVVLDENLS VEFSSPSSSN YTSLEDLGSP EEVGKRVLRQ YLTEFMSTRL GVKRQANILS
201: TSSRVADDGK LYYQVEVSQS QVPNYILLL
Arabidopsis Description
PPD1PPD1 [Source:UniProtKB/TrEMBL;Acc:A0A178UV94]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.