CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, plastid

Predictor Summary:

plastid 4
extracellular 4
endoplasmic reticulum 5
vacuole 4
plasma membrane 4
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, plastid
Any Predictor:	plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os07t0275901-00	Rice	cytosol	23.77	82.89
Os12t0564400-01	Rice	plasma membrane	72.45	77.11
Os07t0275100-00	Rice	endoplasmic reticulum, golgi, vacuole	72.08	74.9
Os07t0275801-00	Rice	cytosol, mitochondrion, plastid	20.0	66.25
TraesCS5B01G093100.1	Wheat	plastid	68.68	65.47
TraesCS5A01G087200.1	Wheat	plastid	68.3	65.11
KRH68425	Soybean	nucleus, plastid	61.89	63.57
GSMUA_Achr3P12740_001	Banana	plastid	61.13	63.03
HORVU5Hr1G022750.1	Barley	plastid	67.92	62.28
VIT_14s0060g00850.t01	Wine grape	plastid	57.36	61.29
TraesCS5D01G099000.1	Wheat	plastid	69.06	61.0
CDY54970	Canola	plastid	57.74	57.52
KRG96702	Soybean	cytosol	41.51	56.99
Bra038081.1-P	Field mustard	plastid	57.36	56.93
CDY22740	Canola	plastid	57.36	56.93
Zm00001d030638_P001	Maize	plastid	76.23	56.74
CDY22909	Canola	plastid	56.6	55.76
Bra039542.1-P	Field mustard	plastid	56.6	55.76
Solyc01g106090.2.1	Tomato	plastid	58.87	54.36
PGSC0003DMT400027723	Potato	cytosol	58.49	54.01
AT4G15510.1	Thale cress	plastid	55.85	51.57

Protein Annotations

MapMan:1.1.4.3.2	Gene3D:3.40.1000.10	EntrezGene:8068853	UniProt:A0A1Z5R6D4	GO:GO:0003674	GO:GO:0005488
GO:GO:0005509	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091
GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009523	GO:GO:0009535	GO:GO:0009536
GO:GO:0009543	GO:GO:0009570	GO:GO:0009579	GO:GO:0009654	GO:GO:0009987	GO:GO:0015979
GO:GO:0016020	GO:GO:0016043	GO:GO:0019898	GO:GO:0031977	GO:GO:0048564	InterPro:IPR016123
InterPro:Mog1/PsbP_a/b/a-sand	EnsemblPlants:OQU79328	ProteinID:OQU79328	ProteinID:OQU79328.1	PFAM:PF01789	PANTHER:PTHR31407
PANTHER:PTHR31407:SF15	InterPro:PsbP	EnsemblPlantsGene:SORBI_3008G131700	SUPFAM:SSF55724	unigene:Sbi.3972	UniParc:UPI000B8BB0B8
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr8:+:55799082..55802267

Molecular Weight (calculated)

29889.9 Da

IEP (calculated)

5.492

GRAVY (calculated)

-0.110

Length

265 amino acids

Sequence
(BLAST)

001: MSKSPKVTSC AVTILIINIL QHCSNIQTVE FSYLTVSASL SLFGTATAKI SAVPRRNVLS TMLSTSTILL LGPRQITLAE TSGGAFREYI DIFDGYTFLY
101: PKSWIQVRGA GADIFFRDPF VLDENMSVEI SSPSSSKYMS VEDLGPPEKA AEKVLKQYLT EFMSTRLGVR RESNVLSAVS KVADDGKLYY EVEVNIKSYA
201: SNNELAVMPQ DRVQSLEWDR RYLSVLGVEN KRLYELRLQT PEQVFMQEEE DIRRVMDSFR VIKTA

Best Arabidopsis Sequence Match ( AT4G15510.1 )
(BLAST)

001: MASSAFAFPS YIITKGASTD SFKSTSLSSS RSLVTDFHLL FSRPISSGPK YQSAKSAKPE SPVAINCLTD AKQVCAVGRR KSMMMGLLMS GLIVSQANLP
101: TAFASTPVFR EYIDTFDGYS FKYPQNWIQV RGAGADIFFR DPVVLDENLS VEFSSPSSSN YTSLEDLGSP EEVGKRVLRQ YLTEFMSTRL GVKRQANILS
201: TSSRVADDGK LYYQVEVNIK SYANNNELAV MPQDRVARLE WNRRYLAVLG VENDRLYSIR LQTPEKVFLE EEKDLRRVMD SFRVEKI

Arabidopsis Description

PPD1PPD1 [Source:UniProtKB/TrEMBL;Acc:A0A178UV94]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.