CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 10
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
ChloroP:	plastid
EpiLoc:	cytosol
iPSORT:	plastid
MultiLoc:	plastid
Plant-mPloc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG96702	Soybean	cytosol	56.98	76.17
Os07t0275901-00	Rice	cytosol	21.71	73.68
VIT_14s0060g00850.t01	Wine grape	plastid	67.44	70.16
Os12t0564400-01	Rice	plasma membrane	64.34	66.67
GSMUA_Achr3P12740_001	Banana	plastid	65.5	65.76
CDY54970	Canola	plastid	66.67	64.66
Bra038081.1-P	Field mustard	plastid	66.67	64.42
CDY22740	Canola	plastid	66.67	64.42
Bra039542.1-P	Field mustard	plastid	65.89	63.2
CDY22909	Canola	plastid	65.5	62.83
Os07t0275100-00	Rice	endoplasmic reticulum, golgi, vacuole	62.02	62.75
OQU79328	Sorghum	endoplasmic reticulum, plastid	63.57	61.89
Os07t0275801-00	Rice	cytosol, mitochondrion, plastid	18.99	61.25
Solyc01g106090.2.1	Tomato	plastid	67.44	60.63
PGSC0003DMT400027723	Potato	cytosol	67.05	60.28
TraesCS5B01G093100.1	Wheat	plastid	61.24	56.83
TraesCS5A01G087200.1	Wheat	plastid	60.85	56.47
AT4G15510.1	Thale cress	plastid	60.85	54.7
HORVU5Hr1G022750.1	Barley	plastid	60.08	53.63
TraesCS5D01G099000.1	Wheat	plastid	61.24	52.67
Zm00001d030638_P001	Maize	plastid	60.85	44.1

Protein Annotations

MapMan:1.1.4.3.2	EntrezGene:100792664	Gene3D:3.40.1000.10	EMBL:ACUP02002115	EnsemblPlantsGene:GLYMA_03G230300	GO:GO:0003674
GO:GO:0005488	GO:GO:0005509	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0008150
GO:GO:0008152	GO:GO:0009523	GO:GO:0009579	GO:GO:0009654	GO:GO:0009987	GO:GO:0015979
GO:GO:0016020	GO:GO:0019898	UniProt:I1JR41	InterPro:IPR016123	EnsemblPlants:KRH68425	ProteinID:KRH68425
ProteinID:KRH68425.1	InterPro:Mog1/PsbP_a/b/a-sand	PFAM:PF01789	PANTHER:PTHR31407	PANTHER:PTHR31407:SF15	InterPro:PsbP
SUPFAM:SSF55724	UniParc:UPI000233A01F	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr3:-:43202257..43204151

Molecular Weight (calculated)

29314.8 Da

IEP (calculated)

7.586

GRAVY (calculated)

-0.312

Length

258 amino acids

Sequence
(BLAST)

001: MANAIIMPGF LLRPTTQTTP FRLPNHTHSF HSPRCSLSLT PQSAKAFAVP RRKALSLILS SYFLSEAGLA LAQQSPVFRE YIDAFDGYSF QYPGSWIQVR
101: GAGADIFFRD PFVLDENLSL EISSPSSSQY KSVEDLGPPQ EAGKKVLKQY LTEFMSTRLG VRRESNILST SSRVADDGRL YYQVEVNIKS YANNNELAVM
201: PEARVVRLEW DRRYLSVLGV ENNQLYELRL QVPENVFSEE ENDLRRIMDS FRVNKIAA

Best Arabidopsis Sequence Match ( AT4G15510.1 )
(BLAST)

001: MASSAFAFPS YIITKGASTD SFKSTSLSSS RSLVTDFHLL FSRPISSGPK YQSAKSAKPE SPVAINCLTD AKQVCAVGRR KSMMMGLLMS GLIVSQANLP
101: TAFASTPVFR EYIDTFDGYS FKYPQNWIQV RGAGADIFFR DPVVLDENLS VEFSSPSSSN YTSLEDLGSP EEVGKRVLRQ YLTEFMSTRL GVKRQANILS
201: TSSRVADDGK LYYQVEVNIK SYANNNELAV MPQDRVARLE WNRRYLAVLG VENDRLYSIR LQTPEKVFLE EEKDLRRVMD SFRVEKI

Arabidopsis Description

PPD1PPD1 [Source:UniProtKB/TrEMBL;Acc:A0A178UV94]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.