Factsheet for Zm00001d030638_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os07t0275901-00	Rice	cytosol	17.13	80.26
Os12t0564400-01	Rice	plasma membrane	53.93	77.11
OQU79328	Sorghum	endoplasmic reticulum, plastid	56.74	76.23
Os07t0275100-00	Rice	endoplasmic reticulum, golgi, vacuole	52.25	72.94
TraesCS5B01G093100.1	Wheat	plastid	51.12	65.47
TraesCS5A01G087200.1	Wheat	plastid	50.84	65.11
Os07t0275801-00	Rice	cytosol, mitochondrion, plastid	14.61	65.0
GSMUA_Achr3P12740_001	Banana	plastid	45.79	63.42
HORVU5Hr1G022750.1	Barley	plastid	51.12	62.98
VIT_14s0060g00850.t01	Wine grape	plastid	43.82	62.9
TraesCS5D01G099000.1	Wheat	plastid	52.25	62.0
KRH68425	Soybean	nucleus, plastid	44.1	60.85
CDY54970	Canola	plastid	44.1	59.02
CDY22740	Canola	plastid	44.1	58.8
Bra038081.1-P	Field mustard	plastid	44.1	58.8
CDY22909	Canola	plastid	44.1	58.36
Bra039542.1-P	Field mustard	plastid	44.1	58.36
KRG96702	Soybean	cytosol	30.62	56.48
AT4G15510.1	Thale cress	plastid	44.38	55.05
Solyc01g106090.2.1	Tomato	plastid	44.1	54.7
PGSC0003DMT400027723	Potato	cytosol	43.54	54.01

Protein Annotations

MapMan:1.1.4.3.2	EntrezGene:100280179	Gene3D:3.40.1000.10	UniProt:A0A1D6KDA7	GO:GO:0003674	GO:GO:0005488
GO:GO:0005509	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091
GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009523	GO:GO:0009535	GO:GO:0009536
GO:GO:0009543	GO:GO:0009570	GO:GO:0009579	GO:GO:0009654	GO:GO:0009987	GO:GO:0015979
GO:GO:0016020	GO:GO:0016043	GO:GO:0019898	GO:GO:0031977	GO:GO:0048564	InterPro:IPR016123
InterPro:Mog1/PsbP_a/b/a-sand	ProteinID:ONM01221.1	PFAM:PF01789	PANTHER:PTHR31407	PANTHER:PTHR31407:SF15	InterPro:PsbP
SUPFAM:SSF55724	UniParc:UPI0008437112	EnsemblPlantsGene:Zm00001d030638	EnsemblPlants:Zm00001d030638_P001	EnsemblPlants:Zm00001d030638_T001	SEG:seg

Description

PsbP domain-containing protein 1 chloroplastic

Coordinates

chr1:-:150127232..150129938

Molecular Weight (calculated)

40412.3 Da

IEP (calculated)

5.243

GRAVY (calculated)

-0.355

Length

356 amino acids

Sequence
(BLAST)

001: MEATAVPRAL SLLGPSLSTA PLLPWMRMNC LRVAVGGGVR RQGGVVWAKK TRRGRDDVAE ERVDTHSFAR KAGESAELFP EAVLFRKKMV REDGQVSPEF
101: ADANEEKLYD FLNIQLKSDM KRIVYLIHED RVEEVENVVS KVQVQRRNVL STMLSAWTIL LLGPGQVSLA ETTGGAFREY IDTFDGYTFL YPKNWIQVRG
201: AGADIFFRDP MVLDENMSVE ISSPSSSRYT SVEDLGPPEK AAEKVLGQYL TEFMSTRLGV RRESNVLSAS SKVADDGKLY YEVEVNIKSY ASNNELAVMP
301: QDRVQSLEWD RRYLSVLGVE NKRLYELRLQ TPEQVFMQEE EDLRRVMDSF RVIKAA

Best Arabidopsis Sequence Match ( AT4G15510.1 )
(BLAST)

001: MASSAFAFPS YIITKGASTD SFKSTSLSSS RSLVTDFHLL FSRPISSGPK YQSAKSAKPE SPVAINCLTD AKQVCAVGRR KSMMMGLLMS GLIVSQANLP
101: TAFASTPVFR EYIDTFDGYS FKYPQNWIQV RGAGADIFFR DPVVLDENLS VEFSSPSSSN YTSLEDLGSP EEVGKRVLRQ YLTEFMSTRL GVKRQANILS
201: TSSRVADDGK LYYQVEVNIK SYANNNELAV MPQDRVARLE WNRRYLAVLG VENDRLYSIR LQTPEKVFLE EEKDLRRVMD SFRVEKI

Arabidopsis Description

PPD1PPD1 [Source:UniProtKB/TrEMBL;Acc:A0A178UV94]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.